| 2026-06-04 | ms609/TreeDist | 2.14.0.9001 | Martin R. Smith | |
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| |
| 2026-06-03 | ms609/TreeTools | 2.4.0.9000 | Martin R. Smith | |
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| |
| 2026-06-03 | klausvigo/phangorn | 3.0.0.1 | Klaus Schliep | |
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| 2026-06-02 | emmanuelparadis/ape | 5.8-3 | Emmanuel Paradis | |
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| 2026-06-01 | willgearty/deeptime | 2.3.1.9000 | William Gearty | |
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| 2026-06-01 | vegandevs/vegan | 2.8-0 | Jari Oksanen | |
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| 2026-05-30 | thej022214/corHMM | 2.10.4 | Jeremy Beaulieu | |
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| 2026-05-30 | ms609/Quartet | 1.4.0 | Martin R. Smith | |
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| 2026-05-18 | paul-buerkner/brms | 2.23.1 | Paul-Christian Bürkner | |
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| 2026-05-15 | rsetienne/secsse | 3.7.0 | Rampal S. Etienne | |
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| 2026-05-14 | sborstein/AnnotationBustR | 1.3.0 | Samuel R. Borstein | |
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| 2026-05-13 | ropensci/tracerer | 2.2.4 | Richèl J.C. Bilderbeek | |
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| 2026-05-12 | ropensci/taxize | 0.10.1 | Zachary Foster | |
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| 2026-05-11 | ms609/TreeSearch | 1.8.0.9001 | Martin R. Smith | |
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| 2026-05-10 | liamrevell/phytools | 2.5-7 | Liam J. Revell | |
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| 2026-04-30 | coleoguy/evobiR | 2.2 | Heath Blackmon | |
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| 2026-04-28 | geomorphr/geomorph | 4.1.0 | Dean Adams | |
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| 2026-04-28 | mlcollyer/RRPP | 2.1.2.999 | Michael Collyer | |
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| 2026-04-28 | thej022214/OUwie | 3.02 | Jeremy Beaulieu | |
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| 2026-04-17 | ms609/TBRDist | 2.0.0 | Martin R. Smith | |
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| 2026-04-16 | jarrodhadfield/MCMCglmm | 2.37 | Jarrod Hadfield | |
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| 2026-04-14 | thej022214/hisse | 2.1.13 | Jeremy Beaulieu | |
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| 2026-04-08 | tguillerme/dispRity | 1.9.8 | Thomas Guillerme | |
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| 2026-03-30 | ms609/Rogue | 2.2.0 | Martin R. Smith | |
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| 2026-03-24 | heibl/ips | 0.1.0 | Christoph Heibl | |
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| 2026-03-23 | kingaa/ouch | 2.20-0 | Aaron A. King | |
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| 2026-03-20 | ropensci/phylotaR | 1.3.0 | Shixiang Wang | |
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| 2026-03-19 | tsieger/idendr0 | 1.5.4 | Tomas Sieger | |
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| 2026-03-19 | jclavel/mvMORPH | 1.2.2 | Julien Clavel | |
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| 2026-03-18 | fossilsim/FossilSim | 2.4.4 | Joëlle Barido-Sottani | |
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| 2026-03-13 | dosreislab/mcmc3r | 0.6.0 | Sandra Alvarez-Carretero | |
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| 2026-03-05 | lamho86/phylolm | 2.7.0 | Lam Si Tung Ho | |
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| 2026-02-11 | uyedaj/bayou | 2.3.2 | Josef C. Uyeda | |
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| 2026-02-05 | graemetlloyd/Claddis | 0.7.0 | Graeme T. Lloyd | |
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| 2026-01-31 | rdiaz02/PHYLOGR | 1.0.12 | Ramon Diaz-Uriarte | |
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| 2026-01-30 | ericmarcon/entropart | 1.6-16 | Eric Marcon | |
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| 2026-01-23 | shaunpwilkinson/aphid | 1.3.6 | Shaun Wilkinson | |
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| 2026-01-20 | fmichonneau/rncl | 0.8.9 | Francois Michonneau | |
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| 2026-01-15 | ropensci/rotl | 3.1.1 | Francois Michonneau | |
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| 2026-01-14 | uscbiostats/aphylo | 0.3-6 | George Vega Yon | |
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| 2026-01-09 | pasraia/RRphylo | 3.0.2 | Silvia Castiglione | |
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| 2026-01-08 | yulab-smu/tidytree | 0.4.7 | Guangchuang Yu | |
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| 2025-12-08 | ropensci/beautier | 2.6.16 | Richèl J.C. Bilderbeek | |
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| 2025-12-08 | ropensci/beastier | 2.5.3 | Richèl J.C. Bilderbeek | |
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| 2025-12-08 | caetanods/ratematrix | 1.2.5 | Daniel Caetano | |
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| 2025-11-11 | daijiang/hillR | 0.6.0 | Daijiang Li | |
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| 2025-11-02 | datelife | 0.6.9 | Luna L. Sanchez Reyes | |
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| 2025-10-17 | revbayes/Revticulate | 1.0.0 | Caleb Charpentier | |
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| 2025-10-06 | ropensci/treedata.table | 0.1.1 | Cristian Roman-Palacios | |
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| 2025-10-03 | BoskR | | Orlando Schwery | |
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|
update failure for v1.1.3 | |
| 2025-09-17 | RPANDA | | Hélène Morlon | |
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|
update failure for v2.5 | |
| 2025-09-03 | emvolz/treedater | 1.0.2 | Erik Volz | |
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| |
| 2025-08-29 | rsetienne/DAMOCLES | 3.1 | Rampal S. Etienne | |
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| 2025-08-27 | tiago-simoes/EvoPhylo | 0.3.5 | Tiago Simoes | |
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| 2025-08-26 | michellekendall/phyloTop | 2.1.3 | Michelle Kendall | |
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| 2025-08-26 | thibautjombart/treespace | 1.1.4.4 | Michelle Kendall | |
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| 2025-08-20 | ptitle/epm | 1.1.6 | Pascal Title | |
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| 2025-07-24 | thibautjombart/apex | 1.0.7 | Klaus Schliep | |
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| 2025-07-15 | talgalili/dendextend | 1.19.1 | Tal Galili | |
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| 2025-07-14 | darunabas/phyloregion | 1.0.9 | Barnabas H. Daru | |
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| 2025-06-10 | fkeck/phylosignal | 1.3.2 | Francois Keck | |
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| |
| 2025-05-06 | thijsjanzen/nodeSub | 1.2.9 | Thijs Janzen | |
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| 2025-04-11 | dosreislab/bppr | 0.6.4 | Mario dos Reis | |
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| 2025-03-14 | thibautjombart/adephylo | 1.1-17 | Aurélie Siberchicot | |
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| 2025-02-19 | uyedaj/treeplyr | 0.1.11 | Josef Uyeda | |
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| 2025-02-12 | heibl/phyloclim | 0.9.8 | Christoph Heibl | |
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| |
| 2025-02-05 | brpetrucci/paleobuddy | 1.1.0 | Bruno do Rosario Petrucci | |
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| 2025-02-05 | kevinarbuckle/windex | 2.1.0 | Kevin Arbuckle | |
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| |
| 2025-01-23 | sborstein/dietr | 1.1.6-1 | Samuel R. Borstein | |
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| 2024-12-13 | ropensci/bold | 1.3.0 | Salix Dubois | |
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| 2024-10-29 | bomeara/dentist | 0.0.4 | Brian OMeara | |
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| 2024-10-16 | oschwery/MonoPhy | 1.3.2 | Orlando Schwery | |
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| |
| 2024-10-10 | helixcn/phylotools | 0.2.5 | Jinlong Zhang | |
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| 2024-10-02 | richfitz/diversitree | 0.10-1 | Richard G. FitzJohn | |
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| 2024-09-12 | graemetlloyd/strap | 1.6-1 | Graeme T. Lloyd | |
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| |
| 2024-09-11 | cran/paleoTS | 0.6.2 | Gene Hunt | |
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| |
| 2024-09-04 | labpackages/CALANGO | 1.0.20 | Felipe Campelo | |
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| |
| 2024-07-09 | dwbapst/paleotree | 3.4.7 | David W. Bapst | |
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| |
| 2024-05-06 | ropensci/RNeXML | 2.4.11 | Carl Boettiger | |
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| |
| 2024-02-16 | ropensci/treebase | 0.1.5 | Carl Boettiger | |
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| 2024-01-29 | fmichonneau/phylobase | 0.8.12 | Francois Michonneau | |
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| |
| 2023-12-26 | gabrielnakamura/FishPhyloMaker | 0.2.0 | Gabriel Nakamura | |
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| |
| 2023-12-19 | BAMMtools | | Pascal Title | |
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|
update failure for v2.1.11 | |
| 2023-11-29 | revbayes/RevGadgets | 1.2.1 | Carrie Tribble | |
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| |
| 2023-10-02 | cboettig/pmc | 1.0.6 | Carl Boettiger | |
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| |
| 2023-09-29 | bomeara/sisters | 0.0.0.9000 | Brian OMeara | |
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| |
| 2023-09-06 | snoweye/phyclust | 0.1-34 | Wei-Chen Chen | |
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| |
| 2023-08-08 | rphylotastic | 0.0.8.1 | Brian OMeara | |
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|
update failure for v0.0.8.1 | |
| 2023-07-27 | bomeara/TreEvo | 0.22.1 | Brian C. OMeara | |
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| |
| 2023-07-10 | skembel/picante | 1.8.3 | Steven W. Kembel | |
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| |
| 2023-04-21 | ropensci/phylocomr | 0.3.4 | Luna Luisa Sanchez Reyes | |
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| |
| 2023-03-19 | wadedismukes/treeducken | 1.1.0.9999 | Wade Dismukes | |
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| |
| 2023-03-10 | marlonecobos/nichevol | 0.1.20 | Marlon E. Cobos | |
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| |
| 2023-02-22 | mwpennell/geiger | 2.0.11 | Luke Harmon | |
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| |
| 2022-12-05 | ropensci/brranching | 0.7.1 | Luna L Sanchez Reyes | |
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| |
| 2022-05-09 | ericgoolsby/Rphylopars | 0.3.9 | Eric W. Goolsby | |
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| |
| 2021-11-08 | bomeara/BMhyb | 2.1.5 | Dwueng-Chwuan Jhwueng | |
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| |
| 2021-11-08 | bomeara/closesamples | 1.0 | Brian C. OMeara | |
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| |
| 2021-11-08 | bomeara/selac | 1.7.5 | Jeremy Beaulieu | |
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| |
| 2021-11-06 | bomeara/flipped | 0.0.1 | Brian OMeara | |
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| |
| 2021-07-01 | mongiardino/extendedSurface | 0.1.0 | Nicolas Mongiardino Koch | |
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| |
| 2021-02-08 | anttonalberdi/hilldiv | 1.5.3 | Antton Alberdi | |
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|
| |
| 2021-02-06 | bomeara/phrapl | 0.6.5 | Brian OMeara | |
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|
| |
| 2020-10-12 | cran/apTreeshape | 1.5-0.1 | Michael Blum | |
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|
| |
| 2020-06-10 | paternogbc/sensiPhy | 0.8.5 | Gustavo Paterno | |
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|
| |
| 2019-12-09 | ropensci/phylogram | 2.1.0.9000 | Shaun Wilkinson | |
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|
| |
| 2018-10-25 | tanja819/TreeSim | 2.2 | Tanja Stadler | |
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|
| |
| 2018-01-20 | bomeara/popularitree | 0.0.0.9000 | Brian OMeara | |
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|
| |
| 2017-10-30 | zachcp/phylocanvas | 0.1.3 | zachary charlop-powers | |
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| |
| 2017-07-13 | bomeara/RateViz | 1.0 | Brian C. OMeara | |
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| |
| 2016-07-13 | tanja819/TreePar | 3.3 | Tanja Stadler | |
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| |
| 2015-06-08 | P2C2M | | Michael Gruenstaeudl | |
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|
update failure for v0.7.6 | |
| 2013-09-03 | cran/laser | 2.4-1 | Dan Rabosky | |
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| |
| 2008-03-25 | cran/phybase | 1.1 | Liang Liu | |
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