Package: brranching 0.7.1

Luna L Sanchez Reyes

brranching: Fetch 'Phylogenies' from Many Sources

Includes methods for fetching 'phylogenies' from a variety of sources, including the 'Phylomatic' web service (<http://phylodiversity.net/phylomatic/>), and 'Phylocom' (<https://github.com/phylocom/phylocom/>).

Authors:Scott Chamberlain [aut], Luna L Sanchez Reyes [ctb, cre]

brranching_0.7.1.tar.gz
brranching_0.7.1.zip(r-4.5)brranching_0.7.1.zip(r-4.4)brranching_0.7.1.zip(r-4.3)
brranching_0.7.1.tgz(r-4.4-any)brranching_0.7.1.tgz(r-4.3-any)
brranching_0.7.1.tar.gz(r-4.5-noble)brranching_0.7.1.tar.gz(r-4.4-noble)
brranching_0.7.1.tgz(r-4.4-emscripten)brranching_0.7.1.tgz(r-4.3-emscripten)
brranching.pdf |brranching.html✨
brranching/json (API)
NEWS

# Install 'brranching' in R:

install.packages('brranching', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

The latest version of this package failed to build. Look at thebuild logs for more information.

Bug tracker:https://github.com/ropensci/brranching/issues

Datasets:

phylomatic_trees - Phylogenies to use with phylomatic
tpl - Lookup-table for family, genus, and species names for ThePlantList gymnosperms

On CRAN:

phylogeny tree phylomatic molecular plants phylogenies

4.62 score 18 stars 1 packages 31 scripts 145 downloads 4 exports 136 dependencies

Last updated 2 years agofrom:efd089fd82. Checks:OK: 7. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Sep 23 2024
R-4.5-win	OK	Aug 24 2024
R-4.5-linux	OK	Sep 23 2024
R-4.4-win	OK	Aug 24 2024
R-4.4-mac	OK	Aug 24 2024
R-4.3-win	OK	Aug 24 2024
R-4.3-mac	OK	Aug 24 2024

Exports:phylomatic phylomatic_local phylomatic_names rbladj

Dependencies:ape askpass assertthat backports base64enc bit bit64 bold bslib cachem checkmate cli clipr cluster clusterGeneration coda codetools colorspace combinat conditionz cpp11 crayon crul curl data.table DEoptim digest doParallel dplyr evaluate expm fansi farver fastmap fastmatch fontawesome foreach foreign Formula fs generics ggplot2 glue gridExtra gtable highr Hmisc hms htmlTable htmltools htmlwidgets httpcode httr igraph isoband iterators jquerylib jsonlite knitr labeling lattice lazyeval lifecycle magrittr maps MASS Matrix memoise mgcv mime mnormt munsell natserv nlme nnet numDeriv openssl optimParallel pbapply phangorn phylocomr phytools pillar pkgconfig plyr prettyunits progress purrr quadprog R6 rappdirs ratelimitr RColorBrewer Rcpp readr rentrez rex ritis rlang rmarkdown rncl rotl rpart rredlist rstudioapi sass scales scatterplot3d solrium stringi stringr sys taxize tibble tidyselect tinytex triebeard tzdb urltools utf8 uuid vctrs viridis viridisLite vroom WikidataQueryServiceR WikidataR WikipediR wikitaxa withr worrms xfun XML xml2 yaml zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
brranching	brranching-package brranching
Query Phylomatic for a phylogenetic tree.	phylomatic
Use Phylomatic locally - ideal for large queries	phylomatic_local
Phylomatic names	phylomatic_names
Phylogenies to use with phylomatic	phylomatic_trees
Run Phylocom's bladj from R	rbladj
Lookup-table for family, genus, and species names for ThePlantList gymnosperms	tpl

Usage by other packages (reverse dependencies)