1. adephylo::carni19
    Phylogeny and quantative trait of carnivora
  2. adephylo::carni70
    Phylogeny and quantitative traits of carnivora
  3. adephylo::lizards
    Phylogeny and quantitative traits of lizards
  4. adephylo::maples
    Phylogeny and quantitative traits of flowers
  5. adephylo::mjrochet
    Phylogeny and quantitative traits of teleos fishes
  6. adephylo::palm
    Phylogenetic and quantitative traits of amazonian palm trees
  7. adephylo::procella
    Phylogeny and quantitative traits of birds
  8. adephylo::tithonia
    Phylogeny and quantitative traits of flowers
  9. adephylo::ungulates
    Phylogeny and quantitative traits of ungulates.
  10. AnnotationBustR::cpDNAterms
    Chloroplast DNA (cpDNA) Search Terms
  11. AnnotationBustR::mtDNAterms
    Mitochondrial DNA Search Terms for Animals
  12. AnnotationBustR::mtDNAtermsPlants
    Mitochondrial DNA Search Terms for Plants
  13. AnnotationBustR::rDNAterms
    Ribosomal DNA (rDNA) Search Terms
  14. ape::HP.links
    Test of host-parasite coevolution
    matrix|15 x 17
  15. ape::bird.families
    Phylogeny of the Families of Birds From Sibley and Ahlquist
  16. ape::bird.orders
    Phylogeny of the Orders of Birds From Sibley and Ahlquist
  17. ape::carnivora
    Carnivora body sizes and life history traits
  18. ape::chiroptera
    Bat Phylogeny
  19. ape::cynipids
    NEXUS Data Example
  20. ape::gopher.D
    Test of host-parasite coevolution
  21. ape::hivtree.newick
    Phylogenetic Tree of 193 HIV-1 Sequences
  22. ape::hivtree.table
    Phylogenetic Tree of 193 HIV-1 Sequences
  23. ape::lice.D
    Test of host-parasite coevolution
  24. ape::lmorigin.ex1
    Multiple regression through the origin
  25. ape::lmorigin.ex2
    Multiple regression through the origin
  26. ape::mat3
    Three Matrices
  27. ape::mat5M3ID
    Five Trees
  28. ape::mat5Mrand
    Five Independent Trees
  29. ape::woodmouse
    Cytochrome b Gene Sequences of Woodmice
    DNAbin|15 x
  30. aphid::casino
    Dishonest casino.
  31. aphid::globins
    Globin protein alignment.
  32. aphid::substitution
    Substitution matrices.
  33. aphylo::fakeexperiment
    Fake Experimental Data
  34. aphylo::faketree
    Fake Phylogenetic Tree
  35. BMhyb::cichlid
    Cichlid dataset
  36. BMhyb::nicotiana
    Nicotiana dataset
  37. BoskR::emptesttrees
    Set of Test Trees for BoskR
  38. bppr::hominids
    A BPP A00 MCMC sample for an hominid phylogeny
  39. bppr::microcebus
    A BPP A00 MCMC sample for a mouse lemur phylogeny
  40. brms::epilepsy
    Epileptic seizure counts
  41. brms::inhaler
    Clarity of inhaler instructions
  42. brms::kidney
    Infections in kidney patients
  43. brms::loss
    Cumulative Insurance Loss Payments
  44. Claddis::day_2016
    Character-taxon matrix from Day et al. 2016
    cladisticMatrix
  45. Claddis::gauthier_1986
    Character-taxon matrix from Gauthier 1986
    cladisticMatrix
  46. Claddis::michaux_1989
    Character-taxon matrix from Michaux 1989
    cladisticMatrix
  47. closesamples::ORCID_TOKEN
  48. closesamples::r
  49. corHMM::primates
    Example datasets
  50. corHMM::primates.paint
    Example datasets
  51. corHMM::rayDISC.example
    Example datasets
  52. DAMOCLES::NWPrimates_data
    Dated phylogenetic tree of the New World Primates in nexus format and presence-absence matrix for species in Manu
  53. dendextend::khan
    Microarray gene expression dataset from Khan et al., 2001. Subset of 306 genes.
  54. dietr::Casaux1998
    Casaux1998
  55. dietr::CortesPreyVals
    CortesPreyVals
  56. dietr::FishBasePreyVals
    FishBasePreyVals
  57. dietr::Herichthys
    Herichthys
  58. dietr::Horn1982
    Horn1982
  59. dietr::SebastesStomachs
    SebastesStomachs
  60. dispRity::BeckLee_ages
    Beck and Lee 2014 datasets
  61. dispRity::BeckLee_disparity
    BeckLee_disparity
    dispRity
  62. dispRity::BeckLee_mat50
    Beck and Lee 2014 datasets
  63. dispRity::BeckLee_mat99
    Beck and Lee 2014 datasets
  64. dispRity::BeckLee_tree
    Beck and Lee 2014 datasets
  65. dispRity::charadriiformes
    Charadriiformes
  66. dispRity::demo_data
    Demo datasets
  67. dispRity::disparity
    disparity
    dispRity
  68. entropart::EightSpAbundance
    Abundances of 8 species to run examples.
  69. entropart::EightSpTree
    Functional tree with 8 species.
    phylog
  70. entropart::Paracou618.Functional
    Functional tree of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
    hclust
  71. entropart::Paracou618.MC
    Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
    MetaCommunity
  72. entropart::Paracou618.Taxonomy
    Taxonomy (Family - Genus - Species) of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
  73. entropart::Paracou618.dist
    Functional distances between pairs of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
  74. epm::tamiasEPM
    Eco Phylo Mapper datasets
    epmGrid
  75. epm::tamiasPolyList
    Eco Phylo Mapper datasets
  76. epm::tamiasTraits
    Eco Phylo Mapper datasets
  77. epm::tamiasTree
    Eco Phylo Mapper datasets
  78. epm::tamiasTreeSet
    Eco Phylo Mapper datasets
    multiPhylo
  79. evobiR::hym.tree
    Phylogenetic tree
  80. evobiR::mite.trait
    phenotype data for mites
  81. evobiR::trees
    10 Phylogenetic trees
    multiPhylo
  82. EvoPhylo::RateTable_Means_1p_Clades
    Mean clock rates by node and clade (single clock)
  83. EvoPhylo::RateTable_Means_3p_Clades
    Mean clock rates by node and clade (3 clock partitions)
  84. EvoPhylo::characters
    A morphological phylogenetic data matrix
    matrix|178 x 43
  85. EvoPhylo::post_trees
    Multiple phylogenetic clock trees
    treedataList
  86. EvoPhylo::posterior1p
    Posterior parameter samples (single clock)
  87. EvoPhylo::posterior3p
    Posterior parameter samples (3 clock partions)
  88. EvoPhylo::tree1p
    Phylogenetic tree with a single clock partition
    treedata
  89. EvoPhylo::tree3p
    Phylogenetic tree with 3 clock partitions
    treedata
  90. EvoPhylo::tree_clock1
    BEAST2 phylogenetic tree with clock rates from partition 1
    treedata
  91. EvoPhylo::tree_clock2
    BEAST2 phylogenetic tree with clock rates from partition 2
    treedata
  92. extendedSurface::echinoid_data
    Comparative dataset used to explore the macroevolution of echinoid body size.
  93. FishPhyloMaker::neotropical_comm
    Abundance of stream fish species in Parana and Paraguay streams
  94. FishPhyloMaker::spp_afrotropic
    List of fish species with occurrence in Afrotropical ecoregion
  95. FishPhyloMaker::taxon_data_PhyloMaker
    Data frame with species names needed to assemble the phylogenetic tree
  96. geiger::amphibia
    example datasets
  97. geiger::caniformia
    example datasets
  98. geiger::carnivores
    example datasets
  99. geiger::caudata
    example datasets
  100. geiger::chelonia
    example datasets
  101. geiger::geospiza
    example datasets
  102. geiger::primates
    example datasets
  103. geiger::whales
    example datasets
  104. geomorph::hummingbirds
    Landmark data from hummingbird bills (includes sliding semilandmarks on curves)
  105. geomorph::larvalMorph
    Head and tail shapes of larval salamanders
  106. geomorph::lizards
    Dorsal head shape data of lizards
    geomorph.data.frame
  107. geomorph::mosquito
    Landmarks on mosquito wings
  108. geomorph::plethShapeFood
    Head shape and food use data from Plethodon salamanders
  109. geomorph::plethodon
    Landmark data from Plethodon salamander heads
  110. geomorph::plethspecies
    Head shape and phylogenetic relationships for several Plethodon salamander species
  111. geomorph::pupfish
    Landmarks on pupfish
  112. geomorph::pupfish.ws
    Landmarks on pupfish
    geomorph.data.frame
  113. geomorph::ratland
    Landmark data from dataset rat
  114. geomorph::scallopPLY
    3D scan of a scallop shell from a .ply file in mesh3d format
  115. geomorph::scallops
    Landmark data from scallop shells
  116. hilldiv::bat.diet.hierarchy
    Bat diet hierarchy
  117. hilldiv::bat.diet.otutable
    Bat diet OTU table
  118. hilldiv::bat.diet.tree
    Bat diet OTU tree
  119. idendr0::hca5000
    idendro demo data
  120. ips::ips.16S
    Bark Beetle 16S Sequences
    DNAbin|42 x
  121. ips::ips.28S
    Bark Beetle 28S Sequences
    DNAbin|28 x
  122. ips::ips.cox1
    Bark Beetle COX1 Sequences
    DNAbin|26 x
  123. ips::ips.tree
    Ips Phylogeny
  124. ips::log_list
    Internal IPS Functions
  125. ips::operator_list
    Internal IPS Functions
  126. laser::agamids
    Ultrametric Phylogeny of Australian Agamid Lizards
  127. laser::plethodon
    plethodon
  128. laser::rtrees5
    Random Phylogenetic Trees
  129. laser::rtrees50
    Random Phylogenetic Trees
  130. laser::warblers
    Branching times from phylogeny of North American Dendroica warblers
  131. mcmc3r::A
    A matrix
  132. mcmc3r::C
    29 3D landmarks from the skulls of 19 carnivoran specimens after Procrustes analysis
    matrix|19 x 87
  133. mcmc3r::C.PS
    Object of class procSym output by Morpho after PA
    symproc
  134. mcmc3r::C.arr.unal
    29 3D landmarks from the skulls of 19 carnivoran specimens before Procrustes analysis
  135. mcmc3r::C.mat.unal
    29 3D landmarks from the skulls of 19 carnivoran specimens before Procrustes analysis
    matrix|19 x 87
  136. mcmc3r::R.sh
    Estimated shrinkage correlation matrix
    matrix|87 x 87
  137. mcmc3r::V
    29 3D landmarks from the skulls of 19 carnivoran specimens after Procrustes analysis
    matrix|21 x 87
  138. mcmc3r::V.PS.nov1
    Object of class array output by Morpho after PA
  139. mcmc3r::V.arr.unal
    29 3D landmarks from the skulls of 21 Vulpes vulpes specimens before Procrustes analysis
  140. mcmc3r::V.mat.unal
    29 3D landmarks from the skulls of 19 carnivoran specimens before Procrustes analysis
    matrix|21 x 87
  141. mcmc3r::carnivores
    Carnivores dataset
  142. mcmc3r::carnivores19x29.raw
    29 3D landmarks from the skulls of 19 carnivoran specimens
  143. mcmc3r::hominids
    A BPP A00 MCMC sample for an hominid phylogeny
  144. mcmc3r::microcebus
    A BPP A00 MCMC sample for a mouse lemur phylogeny
  145. mcmc3r::sim.R
    Correlation matrix for simulations
  146. mcmc3r::sim.tree
    Simulated 8-species tree
  147. mcmc3r::var.foxes
    Vector with the population variance of Vulpes vulpes
  148. mcmc3r::vulpes21x29.raw
    29 3D landmarks from the skulls of 21 Vulpes vulpes specimens
  149. MCMCglmm::BTdata
    Blue Tit Data for a Quantitative Genetic Experiment
  150. MCMCglmm::BTped
    Blue Tit Pedigree
  151. MCMCglmm::PlodiaPO
    Phenoloxidase measures on caterpillars of the Indian meal moth.
  152. MCMCglmm::PlodiaR
    Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.
  153. MCMCglmm::PlodiaRB
    Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.
  154. MCMCglmm::SShorns
    Horn type and genders of Soay Sheep
  155. MonoPhy::Ericacsubfams
    Example dataset for the package MonoPhy.
  156. MonoPhy::Ericactree
    Example dataset for the package MonoPhy.
  157. MonoPhy::Ericactribes
    Example dataset for the package MonoPhy.
  158. mvMORPH::phyllostomid
    Phylogeny and trait data for a sample of Phyllostomid bats
  159. nichevol::character_table
    Example of character table for six species
  160. nichevol::occ_list
    Example of occurrence records for six species
  161. nichevol::par_rec_table
    Example of table with results from parsimony reconstructions
    matrix|11 x 20
  162. nichevol::tree
    Example of a phylogenetic tree for six species
  163. nichevol::tree5
    Example of a phylogenetic tree for five species
  164. nichevol::tree_data
    Example of a list containing a tree and a table of characters for six species
  165. ouch::anolis.ssd
    Greater Antillean anolis lizard sexual size dimorphism data
  166. ouch::bimac
    Anolis bimaculatus lizard size data
  167. ouch::geospiza
    Data on Darwin's finches
  168. OUwie::trait
    An example dataset
  169. OUwie::trait
    An example dataset
  170. OUwie::tree
    An example dataset
  171. OUwie::tree
    An example dataset
  172. paleobuddy::co2
    Jurassic CO2 data
  173. paleobuddy::temp
    Cenozoic temperature data
  174. paleotree::ammoniteTraitsRaia
    Dated Trees and Trait Data for Ammonites, Ceratopsians and Cervids from Raia et al. 2015
  175. paleotree::ammoniteTreeRaia
    Dated Trees and Trait Data for Ammonites, Ceratopsians and Cervids from Raia et al. 2015
  176. paleotree::ceratopsianTreeRaia
    Dated Trees and Trait Data for Ammonites, Ceratopsians and Cervids from Raia et al. 2015
  177. paleotree::cervidTreeRaia
    Dated Trees and Trait Data for Ammonites, Ceratopsians and Cervids from Raia et al. 2015
  178. paleotree::charMatDicrano
    Cladistic Data for Dicranograptid Graptolites from Song and Zhang (2014)
  179. paleotree::cladogramDicranoX12
    Cladistic Data for Dicranograptid Graptolites from Song and Zhang (2014)
  180. paleotree::cladogramDicranoX13
    Cladistic Data for Dicranograptid Graptolites from Song and Zhang (2014)
  181. paleotree::foramAL
    Ancestor-Descendant Relationships for Macroperforate Foraminifera, from Aze et al. (2011)
  182. paleotree::foramALb
    Ancestor-Descendant Relationships for Macroperforate Foraminifera, from Aze et al. (2011)
  183. paleotree::foramAM
    Ancestor-Descendant Relationships for Macroperforate Foraminifera, from Aze et al. (2011)
  184. paleotree::foramAMb
    Ancestor-Descendant Relationships for Macroperforate Foraminifera, from Aze et al. (2011)
  185. paleotree::graptCharMatrix
    Morphlogical Character and Range Data for late Ordovician and Early Silurian Graptoloidea
  186. paleotree::graptDistMat
    Morphlogical Character and Range Data for late Ordovician and Early Silurian Graptoloidea
    matrix|183 x 183
  187. paleotree::graptOccPBDB
    Example Occurrence and Taxonomic Datasets of the Graptolithina from the Paleobiology Database
  188. paleotree::graptRanges
    Morphlogical Character and Range Data for late Ordovician and Early Silurian Graptoloidea
  189. paleotree::graptTaxaPBDB
    Example Occurrence and Taxonomic Datasets of the Graptolithina from the Paleobiology Database
  190. paleotree::graptTimeTree
    Example Occurrence and Taxonomic Datasets of the Graptolithina from the Paleobiology Database
  191. paleotree::graptTree
    Example Occurrence and Taxonomic Datasets of the Graptolithina from the Paleobiology Database
  192. paleotree::kanto
    Example Species Abundances Tables
    matrix|23 x 53
  193. paleotree::retioChar
    Cladogram and Range Data for the Retiolitinae
  194. paleotree::retioRanges
    Cladogram and Range Data for the Retiolitinae
  195. paleotree::retioTree
    Cladogram and Range Data for the Retiolitinae
  196. paleotree::shellSize
    Dated Trees and Trait Data for Ammonites, Ceratopsians and Cervids from Raia et al. 2015
  197. paleotree::sutureComplexity
    Dated Trees and Trait Data for Ammonites, Ceratopsians and Cervids from Raia et al. 2015
  198. paleoTS::cantius_L
    Time-series of the length of lower first molar for the Cantius lineage
    paleoTS
  199. paleoTS::dorsal.spines
    Time-series of dorsal spine data from a fossil stickleback lineage
    paleoTS
  200. phangorn::Laurasiatherian
    Laurasiatherian data (AWCMEE)
  201. phangorn::chloroplast
    Chloroplast alignment
  202. phangorn::mites
    Morphological characters of Mites (SchÀffer et al. 2010)
  203. phangorn::yeast
    Yeast alignment (Rokas et al.)
  204. phrapl::assignFile
    A description for applying phrapl to a test dataset
  205. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  206. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  207. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  208. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  209. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  210. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  211. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  212. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  213. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  214. phrapl::migrationArray
    A description for applying phrapl to a test dataset
  215. phrapl::popAssignments
    A description for applying phrapl to a test dataset
  216. phrapl::trees
    A description for applying phrapl to a test dataset
    multiPhylo
  217. phybase::rooted.tree
    An example of rooted trees
  218. phybase::sptree
    A species tree
  219. phybase::unrooted.tree
    An example of unrooted trees
  220. phyclust::.Color
    Colors for Identifying Clusters in Plots
  221. phyclust::.EMC
    EM Control
  222. phyclust::.amino.acid
    Standard Codes and ids for Nucleotides, SNPs, Codon, Amino Acid and Genetic Code
  223. phyclust::.boundary.method
    Boundary Methods for Population Proportions
  224. phyclust::.code.type
    Code Types of Dataset and Substitution Models
  225. phyclust::.codon
    Standard Codes and ids for Nucleotides, SNPs, Codon, Amino Acid and Genetic Code
  226. phyclust::.edist.model
    Evolution Distance Model
  227. phyclust::.em.method
    EM Methods and Algorithms
  228. phyclust::.genetic.code
    Standard Codes and ids for Nucleotides, SNPs, Codon, Amino Acid and Genetic Code
  229. phyclust::.identifier
    Identifiers for Evolution Models
  230. phyclust::.init.method
    Initialization Methods for EM Algorithms
  231. phyclust::.init.procedure
    Initialization Procedures for EM Algorithms
  232. phyclust::.label.method
    Label Method
  233. phyclust::.missing.code
    Standard Codes and ids for Nucleotides, SNPs, Codon, Amino Acid and Genetic Code
  234. phyclust::.nucleotide
    Standard Codes and ids for Nucleotides, SNPs, Codon, Amino Acid and Genetic Code
  235. phyclust::.se.model
    Sequencing Error Model
  236. phyclust::.snp
    Standard Codes and ids for Nucleotides, SNPs, Codon, Amino Acid and Genetic Code
  237. phyclust::.substitution.model
    Substitution Models for Mutation Processes
  238. phyclust::seq.data.gap
    A Toy Dataset in Class seq.data
    seq.data
  239. phyclust::seq.data.toy
    A Toy Dataset in Class seq.data
    seq.data
  240. phylobase::geospiza
    Data from Darwin's finches
    phylo4d
  241. phylobase::geospiza_raw
    Data from Darwin's finches
  242. phylobase::owls4
    'Owls' data from ape
    phylo4
  243. phyloclim::PNO
    _Oxalis_ section _Palmatifoliae_
  244. phyloclim::equ
    Niche overlap for Oxalis enneaphylla and O. lacinita
  245. phyloclim::sim
    Niche overlap for Oxalis enneaphylla and O. lacinita
  246. phyloclim::sites
    _Oxalis_ section _Palmatifoliae_
  247. phyloclim::tree
    _Oxalis_ section _Palmatifoliae_
  248. PHYLOGR::GarlandJanis.IC
    Independet contrasts for Garland & Janis data set
  249. PHYLOGR::GarlandJanis.Original
    Garland & Janis's 1993 data on mammalian running speed and limb length
  250. PHYLOGR::GarlandJanis.varcov
    Phylogenetic variance-covariance matrix for Garland & Janis (1993).
  251. PHYLOGR::Lacertid.IC
    Independet contrasts for Bauwens and Diaz-Uriarte (1997) lacertid data set
  252. PHYLOGR::Lacertid.Original
    Bauwens and Diaz-Uriarte (1997) lacertid data
  253. PHYLOGR::Lacertid.varcov
    Variance-covariance matrix for lacertids from Bauwens and Diaz-uriarte (1997)
  254. PHYLOGR::SimulExample
    A simulated data set
  255. phylolm::flowerSize
    Flower size of 25 Euphorbiaceae species
  256. phylolm::flowerTree
    Phylogenetic tree of 25 Euphorbiaceae species
  257. phylolm::guidetree
    Binary population tree within Arabidopsis thaliana
  258. phylolm::quartetCF
    Quartet concordance factors across Arabidopsis thaliana
  259. phyloregion::africa
    Plants of southern Africa
  260. phylosignal::navic
    Phylogeny and pollution sensitivity of diatoms
    phylo4d
  261. phylotaR::aotus
    aotus
    Phylota
  262. phylotaR::birds
    birds
    TreeMan
  263. phylotaR::bromeliads
    bromeliads
    Phylota
  264. phylotaR::cycads
    cycads
    Phylota
  265. phylotaR::dragonflies
    dragonflies
    Phylota
  266. phylotaR::mammals
    mammals
    TreeMan
  267. phylotaR::plants
    plants
    TreeMan
  268. phylotaR::sturgeons
    sturgeons
    Phylota
  269. phylotaR::tardigrades
    tardigrades
    Phylota
  270. phylotaR::tinamous
    tinamous
    Phylota
  271. phylotaR::yeasts
    yeasts
    Phylota
  272. phytools::anole.data
    Phylogenetic datasets
  273. phytools::anoletree
    Phylogenetic datasets
    simmap
  274. phytools::ant.geog
    Phylogenetic datasets
  275. phytools::ant.tree
    Phylogenetic datasets
  276. phytools::bat.tree
    Phylogenetic datasets
  277. phytools::bat_virus.data
    Phylogenetic datasets
  278. phytools::betaCoV.tree
    Phylogenetic datasets
  279. phytools::bonyfish.data
    Phylogenetic datasets
  280. phytools::bonyfish.tree
    Phylogenetic datasets
  281. phytools::butterfly.data
    Phylogenetic datasets
  282. phytools::butterfly.tree
    Phylogenetic datasets
  283. phytools::cordylid.data
    Phylogenetic datasets
  284. phytools::cordylid.tree
    Phylogenetic datasets
  285. phytools::darter.tree
    Phylogenetic datasets
  286. phytools::eel.data
    Phylogenetic datasets
  287. phytools::eel.tree
    Phylogenetic datasets
  288. phytools::elapidae.tree
    Phylogenetic datasets
  289. phytools::flatworm.data
    Phylogenetic datasets
  290. phytools::flatworm.tree
    Phylogenetic datasets
  291. phytools::liolaemid.data
    Phylogenetic datasets
  292. phytools::liolaemid.tree
    Phylogenetic datasets
  293. phytools::mammal.data
    Phylogenetic datasets
  294. phytools::mammal.geog
    Phylogenetic datasets
  295. phytools::mammal.tree
    Phylogenetic datasets
  296. phytools::primate.data
    Phylogenetic datasets
  297. phytools::primate.tree
    Phylogenetic datasets
  298. phytools::salamanders
    Phylogenetic datasets
  299. phytools::sunfish.data
    Phylogenetic datasets
  300. phytools::sunfish.tree
    Phylogenetic datasets
    simmap
  301. phytools::tortoise.geog
    Phylogenetic datasets
  302. phytools::tortoise.tree
    Phylogenetic datasets
  303. phytools::tropidurid.data
    Phylogenetic datasets
  304. phytools::tropidurid.tree
    Phylogenetic datasets
    simmap
  305. phytools::vertebrate.data
    Phylogenetic datasets
  306. phytools::vertebrate.tree
    Phylogenetic datasets
  307. phytools::wasp.data
    Phylogenetic datasets
  308. phytools::wasp.trees
    Phylogenetic datasets
    multiPhylo
  309. phytools::whale.tree
    Phylogenetic datasets
  310. picante::IvesGodfray
    Host-parasitoid food web data
  311. picante::phylocom
    Phylocom default data
  312. pmc::anoles
    The anoles data set
  313. pmc::tree
    The phylogeny for the anoles data set
    ouchtree
  314. Quartet::sq_trees
    Eighteen example trees
    multiPhylo
  315. ratematrix::anoles
    Data and phylogenetic tree for Anolis lizards
  316. ratematrix::centrarchidae
    Data and phylogenetic tree for Centrarchidae fishes
  317. RPANDA::Anolis.data
    Anolis dataset
  318. RPANDA::BGB.examples
    BioGeoBEARS stochastic maps
  319. RPANDA::Balaenopteridae
    Balaenopteridae phylogeny
  320. RPANDA::Calomys
    Calomys phylogeny
  321. RPANDA::Caprimulgidae
    The _Caprimulgidae_ phylogeny.
  322. RPANDA::Caprimulgidae_ClaDS2
    An example run of ClaDS2.
  323. RPANDA::Cetacea
    Cetacean phylogeny
  324. RPANDA::Cetacea_clades
    Stochastic map of clade membership in Cetacean phylogeny
    simmap
  325. RPANDA::ClaDS0_example
    An example run of ClaDS0.
  326. RPANDA::InfTemp
    Paleotemperature data across the Cenozoic
  327. RPANDA::Phocoenidae
    Phocoenidae phylogeny
  328. RPANDA::Phyllostomidae
    Phyllostomidae phylogeny
  329. RPANDA::Phyllostomidae_genera
    Phylogenies of Phyllostomidae genera
  330. RPANDA::co2
    co2 data since the Jurassic
  331. RPANDA::co2
    co2 data since the Jurassic
  332. RPANDA::coccolithophore
    Coccolithophore diversity since the Jurassic
  333. RPANDA::d13c
    d13c data since the Jurassic
  334. RPANDA::foraminifera
    Foraminifera diversity since the Jurassic
  335. RPANDA::greenalgae
    Green algae diversity since the Jurassic
  336. RPANDA::landplant
    Land plant diversity since the Jurassic
  337. RPANDA::mycorrhizal_network
    Mycorrhizal network from La RĂ©union island
  338. RPANDA::ostracoda
    Ostracod diversity since the Jurassic
  339. RPANDA::radiolaria
    Radiolaria diversity since the Jurassic
  340. RPANDA::redalgae
    Red algae diversity since the Jurassic
  341. RPANDA::sealevel
    Sea level data since the Jurassic
  342. RPANDA::shifts_cetacea
    Cetacean shift.estimates results
  343. RPANDA::silica
    Silica data across the Cenozoic
  344. RPANDA::taxo_cetacea
    Cetacean taxonomy
  345. rphylotastic::flower_plant_fams
    Flowering plants families from Open Tree Taxonomy
  346. rphylotastic::terrestrial_plant_orders
    Flowering plants families from Open Tree Taxonomy
  347. RRphylo::DataApes
    Example dataset
  348. RRphylo::DataCetaceans
    Example dataset
  349. RRphylo::DataFelids
    Example dataset
  350. RRphylo::DataOrnithodirans
    Example dataset
  351. RRphylo::DataSimians
    Example dataset
  352. RRphylo::DataUng
    Example dataset
  353. RRPP::PlethMorph
    Plethodon comparative morphological data
    rrpp.data.frame
  354. RRPP::Pupfish
    Landmarks on pupfish
    rrpp.data.frame
  355. RRPP::PupfishHeads
    Landmarks on pupfish heads
    rrpp.data.frame
  356. RRPP::fishy
    Simulated fish data for measurement error analysis
  357. RRPP::motionpaths
    Simulated motion paths
  358. secsse::example_phy_GeoSSE
    A phylogeny with traits at the tips
  359. secsse::phylo_vignette
    A phylogenetic reconstuction to run the vignette
  360. secsse::traits
    A table with trait info to run the vignette
  361. selac::model.fit
    Example yeast dataset
  362. selac::model.fit
    Example yeast dataset
  363. selac::non_zero_pos
    Example datasets
  364. selac::phy
    Example yeast dataset
  365. selac::phy
    Example yeast dataset
  366. selac::yeast.gene
    Example yeast dataset
    DNAbin|8 x
  367. sensiPhy::alien
    Alien Mammals dataset: Example dataset for the package sensiPhy
    data.phy
  368. sensiPhy::alien.data
    Alien Mammals dataset: Example dataset for the package sensiPhy
  369. sensiPhy::alien.phy
    Alien Mammals dataset: Example dataset for the package sensiPhy
    multiPhylo
  370. sensiPhy::primates
    Primates dataset: Example dataset for the package sensiPhy
    data.phy
  371. sensiPhy::primates.data
    Primates dataset: Example dataset for the package sensiPhy
  372. sensiPhy::primates.phy
    Primates dataset: Example dataset for the package sensiPhy
    multiPhylo
  373. strap::Asaphidae
    Phylogeny and age data for the Asaphidae
  374. strap::Dipnoi
    Phylogeny and age data for dipnoans (lungfish)
  375. strap::UKzones
    British regional stages for the Ordovician
  376. treebase::metadata
    metadata.rda
  377. treebase::treebase
    treebase.rda
  378. treedata.table::anolis
    Anole data
  379. treeplyr::anolis
    Anole data
  380. TreeSearch::congreveLamsdellMatrices
    100 simulated data matrices
  381. TreeSearch::inapplicable.citations
    Thirty datasets with inapplicable data
  382. TreeSearch::inapplicable.datasets
    Thirty datasets with inapplicable data
  383. TreeSearch::inapplicable.phyData
    Thirty datasets with inapplicable data
  384. TreeSearch::inapplicable.trees
    Thirty datasets with inapplicable data
  385. TreeSearch::profiles
    Empirically counted profiles for small trees
  386. TreeSearch::referenceTree
    Tree topology for matrix simulation
  387. treespace::DengueBEASTMCC
    Dengue fever BEAST MCC tree
  388. treespace::DengueSeqs
    Dengue fever sequences
    DNAbin|17 x
  389. treespace::DengueTrees
    BEAST analysis of Dengue fever
    multiPhylo
  390. treespace::fluTrees
    BEAST analysis of seasonal influenza (A/H3N2)
    multiPhylo
  391. treespace::woodmiceTrees
    Bootstrap trees from woodmouse dataset
    multiPhylo
  392. TreeTools::Lobo.data
    Data from Zhang et al. 2016
  393. TreeTools::Lobo.phy
    Data from Zhang et al. 2016
  394. TreeTools::brewer
    Brewer palettes
  395. TreeTools::nRootedShapes
    Number of rooted / unrooted tree shapes
  396. TreeTools::nUnrootedShapes
    Number of rooted / unrooted tree shapes
  397. TreeTools::unrootedKeys
    Integer representing shape of a tree
  398. TreEvo::ancStateExample
    Example Analysis Output of a Simulated Dataset
  399. TreEvo::genRateExample
    Example Analysis Output of a Simulated Dataset
  400. TreEvo::resultsBMExample
    Example Analysis Output of a Simulated Dataset
    multiRun_doRun_prc
  401. TreEvo::resultsBoundExample
    Example Analysis Output of a Simulated Dataset
    multiRun_doRun_prc
  402. TreEvo::simCharExample
    Example Analysis Output of a Simulated Dataset
  403. TreEvo::simPhyExample
    Example Analysis Output of a Simulated Dataset
  404. vegan::BCI
    Barro Colorado Island Tree Counts
  405. vegan::BCI.env
    Barro Colorado Island Tree Counts
  406. vegan::dune
    Vegetation and Environment in Dutch Dune Meadows.
  407. vegan::dune.env
    Vegetation and Environment in Dutch Dune Meadows.
  408. vegan::dune.phylodis
    Taxonomic Classification and Phylogeny of Dune Meadow Species
  409. vegan::dune.taxon
    Taxonomic Classification and Phylogeny of Dune Meadow Species
  410. vegan::mite
    Oribatid Mite Data with Explanatory Variables
  411. vegan::mite.env
    Oribatid Mite Data with Explanatory Variables
  412. vegan::mite.pcnm
    Oribatid Mite Data with Explanatory Variables
  413. vegan::mite.xy
    Oribatid Mite Data with Explanatory Variables
  414. vegan::pyrifos
    Response of Aquatic Invertebrates to Insecticide Treatment
  415. vegan::sipoo
    Birds in the Archipelago of Sipoo (Sibbo and BorgÄ)
  416. vegan::sipoo.map
    Birds in the Archipelago of Sipoo (Sibbo and BorgÄ)
  417. vegan::varechem
    Vegetation and environment in lichen pastures
  418. vegan::varespec
    Vegetation and environment in lichen pastures
  419. windex::sample.data
    Sample data for windex
  420. windex::sample.tree
    Phylogenetic tree to accompany sample.data