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All packages in 'phylotastic' (JSON format)All packages 'phylotastic' (NDJSON stream)adephyloAnnotationBustRapeapexaphidaphylobayoubeastierbeautierBMhybBoskRbpprbrmsbrranchingCALANGOCladdisclosesamplescorHMMDAMOCLESdatelifedendextenddentistdietrdispRitydiversitreeentropartepmevobiREvoPhyloextendedSurfaceFishPhyloMakerflippedFossilSimgeigergeomorphhilldivhillRhisseidendr0ipslasermcmc3rMCMCglmmMonoPhymvMORPHnichevolnodeSubouchOUwieP2C2MpaleobuddypaleotreepaleoTSphangornphraplphybasephyclustphylobasephylocanvasphyloclimphylocomrPHYLOGRphylogramphylolmphyloregionphylosignalphylotaRphylotoolsphyloTopphytoolspicantepmcpopularitreeQuartetratematrixRateVizRevGadgetsRevticulateRNeXMLRoguerotlRPANDARphyloparsrphylotasticRRphyloRRPPsecsseselacsensiPhysistersstraptaxizeTBRDisttidytreetracerertreebasetreedata.tabletreedaterTreeDisttreeduckenTreePartreeplyrTreeSearchTreeSimtreespaceTreeToolsTreEvoveganwindex

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adephylo::carni19 (list)adephylo::carni70 (list)adephylo::lizards (list)adephylo::maples (list)adephylo::mjrochet (list)adephylo::palm (list)adephylo::procella (list)adephylo::tithonia (list)adephylo::ungulates (list)AnnotationBustR::cpDNAterms (data.frame)AnnotationBustR::mtDNAterms (data.frame)AnnotationBustR::mtDNAtermsPlants (data.frame)AnnotationBustR::rDNAterms (data.frame)ape::HP.links (matrix)ape::bird.families (phylo)ape::bird.orders (phylo)ape::carnivora (data.frame)ape::chiroptera (phylo)ape::cynipids (list)ape::gopher.D (data.frame)ape::hivtree.newick (character)ape::hivtree.table (data.frame)ape::lice.D (data.frame)ape::lmorigin.ex1 (data.frame)ape::lmorigin.ex2 (data.frame)ape::mat3 (data.frame)ape::mat5M3ID (data.frame)ape::mat5Mrand (data.frame)ape::woodmouse (DNAbin)aphid::casino (character)aphid::globins (matrix)aphid::substitution (list)aphylo::fakeexperiment (matrix)aphylo::faketree (matrix)BMhyb::cichlid (list)BMhyb::nicotiana (list)BoskR::emptesttrees (list)bppr::hominids (list)bppr::microcebus (list)brms::epilepsy (data.frame)brms::inhaler (data.frame)brms::kidney (data.frame)brms::loss (data.frame)Claddis::day_2016 (cladisticMatrix)Claddis::gauthier_1986 (cladisticMatrix)Claddis::michaux_1989 (cladisticMatrix)closesamples::ORCID_TOKEN (character)closesamples::r (character)corHMM::primates (list)corHMM::primates.paint (list)corHMM::rayDISC.example (list)DAMOCLES::NWPrimates_data (list)dendextend::khan (list)dietr::Casaux1998 (data.frame)dietr::CortesPreyVals (data.frame)dietr::FishBasePreyVals (data.frame)dietr::Herichthys (data.frame)dietr::Horn1982 (list)dietr::SebastesStomachs (data.frame)dispRity::BeckLee_ages (data.frame)dispRity::BeckLee_disparity (dispRity)dispRity::BeckLee_mat50 (matrix)dispRity::BeckLee_mat99 (matrix)dispRity::BeckLee_tree (phylo)dispRity::charadriiformes (list)dispRity::demo_data (list)dispRity::disparity (dispRity)entropart::EightSpAbundance (integer)entropart::EightSpTree (phylog)entropart::Paracou618.Functional (hclust)entropart::Paracou618.MC (MetaCommunity)entropart::Paracou618.Taxonomy (phylo)entropart::Paracou618.dist (dist)epm::tamiasEPM (epmGrid)epm::tamiasPolyList (list)epm::tamiasTraits (data.frame)epm::tamiasTree (phylo)epm::tamiasTreeSet (multiPhylo)evobiR::hym.tree (phylo)evobiR::mite.trait (data.frame)evobiR::trees (multiPhylo)EvoPhylo::RateTable_Means_1p_Clades (data.frame)EvoPhylo::RateTable_Means_3p_Clades (data.frame)EvoPhylo::characters (matrix)EvoPhylo::post_trees (treedataList)EvoPhylo::posterior1p (data.frame)EvoPhylo::posterior3p (data.frame)EvoPhylo::tree1p (treedata)EvoPhylo::tree3p (treedata)EvoPhylo::tree_clock1 (treedata)EvoPhylo::tree_clock2 (treedata)extendedSurface::echinoid_data (list)FishPhyloMaker::neotropical_comm (data.frame)FishPhyloMaker::spp_afrotropic (character)FishPhyloMaker::taxon_data_PhyloMaker (data.frame)geiger::amphibia (list)geiger::caniformia (list)geiger::carnivores (list)geiger::caudata (list)geiger::chelonia (list)geiger::geospiza (list)geiger::primates (list)geiger::whales (list)geomorph::hummingbirds (list)geomorph::larvalMorph (list)geomorph::lizards (geomorph.data.frame)geomorph::mosquito (list)geomorph::plethShapeFood (list)geomorph::plethodon (list)geomorph::plethspecies (list)geomorph::pupfish (list)geomorph::pupfish.ws (geomorph.data.frame)geomorph::ratland (array)geomorph::scallopPLY (list)geomorph::scallops (list)hilldiv::bat.diet.hierarchy (data.frame)hilldiv::bat.diet.otutable (data.frame)hilldiv::bat.diet.tree (phylo)idendr0::hca5000 (list)ips::ips.16S (DNAbin)ips::ips.28S (DNAbin)ips::ips.cox1 (DNAbin)ips::ips.tree (phylo)ips::log_list (data.frame)ips::operator_list (data.frame)laser::agamids (character)laser::plethodon (numeric)laser::rtrees5 (list)laser::rtrees50 (list)laser::warblers (numeric)mcmc3r::A (matrix)mcmc3r::C (matrix)mcmc3r::C.PS (symproc)mcmc3r::C.arr.unal (array)mcmc3r::C.mat.unal (matrix)mcmc3r::R.sh (matrix)mcmc3r::V (matrix)mcmc3r::V.PS.nov1 (array)mcmc3r::V.arr.unal (array)mcmc3r::V.mat.unal (matrix)mcmc3r::carnivores (list)mcmc3r::carnivores19x29.raw (data.frame)mcmc3r::hominids (list)mcmc3r::microcebus (list)mcmc3r::sim.R (matrix)mcmc3r::sim.tree (phylo)mcmc3r::var.foxes (numeric)mcmc3r::vulpes21x29.raw (data.frame)MCMCglmm::BTdata (data.frame)MCMCglmm::BTped (data.frame)MCMCglmm::PlodiaPO (data.frame)MCMCglmm::PlodiaR (data.frame)MCMCglmm::PlodiaRB (data.frame)MCMCglmm::SShorns (data.frame)MonoPhy::Ericacsubfams (data.frame)MonoPhy::Ericactree (phylo)MonoPhy::Ericactribes (data.frame)mvMORPH::phyllostomid (list)nichevol::character_table (matrix)nichevol::occ_list (list)nichevol::par_rec_table (matrix)nichevol::tree (phylo)nichevol::tree5 (phylo)nichevol::tree_data (list)ouch::anolis.ssd (data.frame)ouch::bimac (data.frame)ouch::geospiza (list)OUwie::trait (data.frame)OUwie::trait (data.frame)OUwie::tree (phylo)OUwie::tree (phylo)paleobuddy::co2 (data.frame)paleobuddy::temp (data.frame)paleotree::ammoniteTraitsRaia (data.frame)paleotree::ammoniteTreeRaia (phylo)paleotree::ceratopsianTreeRaia (phylo)paleotree::cervidTreeRaia (phylo)paleotree::charMatDicrano (data.frame)paleotree::cladogramDicranoX12 (phylo)paleotree::cladogramDicranoX13 (phylo)paleotree::foramAL (data.frame)paleotree::foramALb (data.frame)paleotree::foramAM (data.frame)paleotree::foramAMb (data.frame)paleotree::graptCharMatrix (data.frame)paleotree::graptDistMat (matrix)paleotree::graptOccPBDB (data.frame)paleotree::graptRanges (list)paleotree::graptTaxaPBDB (data.frame)paleotree::graptTimeTree (phylo)paleotree::graptTree (phylo)paleotree::kanto (matrix)paleotree::retioChar (matrix)paleotree::retioRanges (list)paleotree::retioTree (phylo)paleotree::shellSize (numeric)paleotree::sutureComplexity (numeric)paleoTS::cantius_L (paleoTS)paleoTS::dorsal.spines (paleoTS)phangorn::Laurasiatherian (phyDat)phangorn::chloroplast (phyDat)phangorn::mites (phyDat)phangorn::yeast (phyDat)phrapl::assignFile (data.frame)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::migrationArray (list)phrapl::popAssignments (list)phrapl::trees (multiPhylo)phybase::rooted.tree (character)phybase::sptree (character)phybase::unrooted.tree (character)phyclust::.Color (character)phyclust::.EMC (list)phyclust::.amino.acid (data.frame)phyclust::.boundary.method (character)phyclust::.code.type (character)phyclust::.codon (data.frame)phyclust::.edist.model (character)phyclust::.em.method (character)phyclust::.genetic.code (data.frame)phyclust::.identifier (character)phyclust::.init.method (character)phyclust::.init.procedure (character)phyclust::.label.method (character)phyclust::.missing.code (data.frame)phyclust::.nucleotide (data.frame)phyclust::.se.model (character)phyclust::.snp (data.frame)phyclust::.substitution.model (data.frame)phyclust::seq.data.gap (seq.data)phyclust::seq.data.toy (seq.data)phylobase::geospiza (phylo4d)phylobase::geospiza_raw (list)phylobase::owls4 (phylo4)phyloclim::PNO (list)phyloclim::equ (ntest)phyloclim::sim (ntest)phyloclim::sites (data.frame)phyloclim::tree (phylo)PHYLOGR::GarlandJanis.IC (data.frame)PHYLOGR::GarlandJanis.Original (data.frame)PHYLOGR::GarlandJanis.varcov (data.frame)PHYLOGR::Lacertid.IC (data.frame)PHYLOGR::Lacertid.Original (data.frame)PHYLOGR::Lacertid.varcov (data.frame)PHYLOGR::SimulExample (data.frame)phylolm::flowerSize (data.frame)phylolm::flowerTree (phylo)phylolm::guidetree (phylo)phylolm::quartetCF (data.frame)phyloregion::africa (list)phylosignal::navic (phylo4d)phylotaR::aotus (Phylota)phylotaR::birds (TreeMan)phylotaR::bromeliads (Phylota)phylotaR::cycads (Phylota)phylotaR::dragonflies (Phylota)phylotaR::mammals (TreeMan)phylotaR::plants (TreeMan)phylotaR::sturgeons (Phylota)phylotaR::tardigrades (Phylota)phylotaR::tinamous (Phylota)phylotaR::yeasts (Phylota)phytools::anole.data (data.frame)phytools::anoletree (simmap)phytools::ant.geog (factor)phytools::ant.tree (phylo)phytools::bat.tree (phylo)phytools::bat_virus.data (data.frame)phytools::betaCoV.tree (phylo)phytools::bonyfish.data (data.frame)phytools::bonyfish.tree (phylo)phytools::butterfly.data (data.frame)phytools::butterfly.tree (phylo)phytools::cordylid.data (data.frame)phytools::cordylid.tree (phylo)phytools::darter.tree (phylo)phytools::eel.data (data.frame)phytools::eel.tree (phylo)phytools::elapidae.tree (phylo)phytools::flatworm.data (data.frame)phytools::flatworm.tree (phylo)phytools::liolaemid.data (data.frame)phytools::liolaemid.tree (phylo)phytools::mammal.data (data.frame)phytools::mammal.geog (matrix)phytools::mammal.tree (phylo)phytools::primate.data (data.frame)phytools::primate.tree (phylo)phytools::salamanders (phylo)phytools::sunfish.data (data.frame)phytools::sunfish.tree (simmap)phytools::tortoise.geog (data.frame)phytools::tortoise.tree (phylo)phytools::tropidurid.data (data.frame)phytools::tropidurid.tree (simmap)phytools::vertebrate.data (data.frame)phytools::vertebrate.tree (phylo)phytools::wasp.data (data.frame)phytools::wasp.trees (multiPhylo)phytools::whale.tree (phylo)picante::IvesGodfray (list)picante::phylocom (list)pmc::anoles (data.frame)pmc::tree (ouchtree)Quartet::sq_trees (multiPhylo)ratematrix::anoles (list)ratematrix::centrarchidae (list)RPANDA::Anolis.data (list)RPANDA::BGB.examples (list)RPANDA::Balaenopteridae (phylo)RPANDA::Calomys (phylo)RPANDA::Caprimulgidae (phylo)RPANDA::Caprimulgidae_ClaDS2 (list)RPANDA::Cetacea (phylo)RPANDA::Cetacea_clades (simmap)RPANDA::ClaDS0_example (list)RPANDA::InfTemp (data.frame)RPANDA::Phocoenidae (phylo)RPANDA::Phyllostomidae (phylo)RPANDA::Phyllostomidae_genera (list)RPANDA::co2 (data.frame)RPANDA::co2 (data.frame)RPANDA::coccolithophore (data.frame)RPANDA::d13c (data.frame)RPANDA::foraminifera (data.frame)RPANDA::greenalgae (data.frame)RPANDA::landplant (data.frame)RPANDA::mycorrhizal_network (list)RPANDA::ostracoda (data.frame)RPANDA::radiolaria (data.frame)RPANDA::redalgae (data.frame)RPANDA::sealevel (data.frame)RPANDA::shifts_cetacea (list)RPANDA::silica (data.frame)RPANDA::taxo_cetacea (data.frame)rphylotastic::flower_plant_fams (character)rphylotastic::terrestrial_plant_orders (character)RRphylo::DataApes (list)RRphylo::DataCetaceans (list)RRphylo::DataFelids (list)RRphylo::DataOrnithodirans (list)RRphylo::DataSimians (list)RRphylo::DataUng (list)RRPP::PlethMorph (rrpp.data.frame)RRPP::Pupfish (rrpp.data.frame)RRPP::PupfishHeads (rrpp.data.frame)RRPP::fishy (list)RRPP::motionpaths (list)secsse::example_phy_GeoSSE (phylo)secsse::phylo_vignette (phylo)secsse::traits (data.frame)selac::model.fit (selon)selac::model.fit (selac)selac::non_zero_pos (integer)selac::phy (phylo)selac::phy (phylo)selac::yeast.gene (DNAbin)sensiPhy::alien (data.phy)sensiPhy::alien.data (data.frame)sensiPhy::alien.phy (multiPhylo)sensiPhy::primates (data.phy)sensiPhy::primates.data (data.frame)sensiPhy::primates.phy (multiPhylo)strap::Asaphidae (list)strap::Dipnoi (list)strap::UKzones (data.frame)treebase::metadata (list)treebase::treebase (list)treedata.table::anolis (list)treeplyr::anolis (list)TreeSearch::congreveLamsdellMatrices (list)TreeSearch::inapplicable.citations (character)TreeSearch::inapplicable.datasets (list)TreeSearch::inapplicable.phyData (list)TreeSearch::inapplicable.trees (list)TreeSearch::profiles (list)TreeSearch::referenceTree (phylo)treespace::DengueBEASTMCC (phylo)treespace::DengueSeqs (DNAbin)treespace::DengueTrees (multiPhylo)treespace::fluTrees (multiPhylo)treespace::woodmiceTrees (multiPhylo)TreeTools::Lobo.data (list)TreeTools::Lobo.phy (phyDat)TreeTools::brewer (list)TreeTools::nRootedShapes (integer64)TreeTools::nUnrootedShapes (integer64)TreeTools::unrootedKeys (list)TreEvo::ancStateExample (numeric)TreEvo::genRateExample (numeric)TreEvo::resultsBMExample (multiRun_doRun_prc)TreEvo::resultsBoundExample (multiRun_doRun_prc)TreEvo::simCharExample (data.frame)TreEvo::simPhyExample (phylo)vegan::BCI (data.frame)vegan::BCI.env (data.frame)vegan::dune (data.frame)vegan::dune.env (data.frame)vegan::dune.phylodis (dist)vegan::dune.taxon (data.frame)vegan::mite (data.frame)vegan::mite.env (data.frame)vegan::mite.pcnm (data.frame)vegan::mite.xy (data.frame)vegan::pyrifos (data.frame)vegan::sipoo (data.frame)vegan::sipoo.map (data.frame)vegan::varechem (data.frame)vegan::varespec (data.frame)windex::sample.data (data.frame)windex::sample.tree (phylo)

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adephyloAnnotationBustRapeapexaphidaphylobayoubeastierbeautierBMhybBoskRbpprbrmsbrranchingCALANGOCladdisclosesamplescorHMMDAMOCLESdatelifedendextenddentistdietrdispRitydiversitreeentropartepmevobiREvoPhyloextendedSurfaceFishPhyloMakerflippedFossilSimgeigergeomorphhilldivhillRhisseidendr0ipslasermcmc3rMCMCglmmMonoPhymvMORPHnichevolnodeSubouchOUwieP2C2MpaleobuddypaleotreepaleoTSphangornphraplphybasephyclustphylobasephylocanvasphyloclimphylocomrPHYLOGRphylogramphylolmphyloregionphylosignalphylotaRphylotoolsphyloTopphytoolspicantepmcpopularitreeQuartetratematrixRateVizRevGadgetsRevticulateRNeXMLRoguerotlRPANDARphyloparsrphylotasticRRphyloRRPPsecsseselacsensiPhysistersstraptaxizeTBRDisttidytreetracerertreebasetreedata.tabletreedaterTreeDisttreeduckenTreePartreeplyrTreeSearchTreeSimtreespaceTreeToolsTreEvoveganwindex