This package is hidden from search results because it is not hosted in the universe of the upstream ownercoleoguy. To fix this you can add URL: https://phylotastic.r-universe.dev/evobiR to the package DESCRIPTION file. See also theR-universe documentation.

Package: evobiR 2.2.1

Heath Blackmon

evobiR: Evolutionary Biology in R

Comparative analysis of continuous traits influencing discrete states, and utility tools to facilitate comparative analyses. Implementations of ABBA/BABA type statistics to test for introgression in genomic data.

Authors:Michelle M. Jonika, Maximos Chin, Nathan Anderson, Meghann McConnell, Richard H. Adams, Jeffery P. Demuth, and Heath Blackmon

evobiR_2.2.1.tar.gz
evobiR_2.2.1.zip(r-4.7-any)evobiR_2.2.1.zip(r-4.6-any)evobiR_2.2.1.zip(r-4.5-any)
evobiR_2.2.1.tgz(r-4.6-any)evobiR_2.2.1.tgz(r-4.5-any)
evobiR_2.2.1.tar.gz(r-4.7-any)evobiR_2.2.1.tar.gz(r-4.6-any)
evobiR_2.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
evobiR/json (API)

# Install 'evobiR' in R:

install.packages('evobiR', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/coleoguy/evobir/issues

Datasets:

hym.tree - Hymenoptera phylogenetic tree
mite.trait - Phenotype data for mites
trees - 10 phylogenetic trees for mites

On CRAN:

comparative-methods evolutionary-biology phylogenetics

7.32 score 22 stars 113 scripts 117 downloads 3 mentions 18 exports 66 dependencies

Last updated from:ec8e0587a9. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel	OK	187
source / vignettes	OK	219
linux-release	OK	142
macos-release	OK	192
macos-oldrel	OK	109
windows-devel	OK	139
windows-release	OK	133
windows-oldrel	OK	127
wasm-release	OK	129

Exports:AncCond CalcD CalcPopD countTrees fix.simmap FuzzyMatch getNe GetTipRates make.simmap2 Mode pSAF ReOrderAlignment ResSel SampleTrees scaleTreeRates SlidingWindow SuperMatrix WinCalcD

Dependencies:ade4 ape backports castor checkmate cli clusterGeneration coda codetools combinat cpp11 DEoptim digest doParallel expm farver foreach future future.apply generics ggplot2 globals glue gridExtra gtable igraph isoband iterators jsonlite labeling lattice lifecycle listenv magrittr maps MASS Matrix mnormt naturalsort nlme numDeriv optimParallel osqp parallelly phangorn phytools pixmap pkgconfig progressr R6 RColorBrewer Rcpp RcppArmadillo RcppEigen rlang RSpectra S7 scales scatterplot3d segmented seqinr sp vctrs viridis viridisLite withr

Evolutionary biology in R (evobiR) tutorial

Rendered fromevolutionary.biology.in.R.Rmdusingknitr::rmarkdown

Last update: 2026-03-20
Started: 2015-10-19

Help page	Topics
evobiR: Evolutionary Biology in R	evobiR-package evobiR
Simulated SNP alignment data	1.fasta 3.fasta
Calculate the mean of a continuous character at transitions in a binary charachter	AncCond
Patterson's D-Statistic (ABBA-BABA Test)	CalcD
Population-Level Patterson's D-Statistic	CalcPopD
Count Tree Topologies in a Collection	countTrees
Fix Failed Branches in Stochastic Mapping	fix.simmap
Fuzzy Name Matching Between Tree and Data	FuzzyMatch
Effective Population Size from Census Numbers	getNe
Calculate Evolutionary Rates at Tree Tips	GetTipRates
Gnatocerus cornutus measurements	horn.beetle.csv
Hymenoptera phylogenetic tree	hym.tree
Enhanced Stochastic Character Mapping	make.simmap2
Phenotype data for mites	mite.trait
Statistical Mode	Mode
Plot a Rate-Scaled Phylogeny	plot.phyloscaled
Probability of Sex-Autosome Fusion	pSAF
Reorder Sequences in a FASTA Alignment	ReOrderAlignment
Residual Selection for Artificial Breeding Experiments	ResSel
Sample Trees from Bayesian MCMC Output	SampleTrees
Analyze Rate Heterogeneity in Discrete Character Evolution	scaleTreeRates
Sliding Window Analysis	SlidingWindow
Build a Supermatrix from Multiple Sequence Alignments	SuperMatrix
10 phylogenetic trees for mites	trees trees.mite
100 simulated phylogenetic trees	trees.nex
Windowed Patterson's D-Statistic	WinCalcD

Package: evobiR 2.2.1

evobiR: Evolutionary Biology in R

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)