Package: evobiR 2.2

Heath Blackmon

evobiR: Evolutionary Biology in R

Comparative analysis of continuous traits influencing discrete states, and utility tools to facilitate comparative analyses. Implementations of ABBA/BABA type statistics to test for introgression in genomic data.

Authors:Michelle M. Jonika, Maximos Chin, Nathan Anderson, Richard H. Adams, Jeffery P. Demuth, and Heath Blackmon

evobiR_2.2.tar.gz
evobiR_2.2.zip(r-4.7)evobiR_2.2.zip(r-4.6)evobiR_2.2.zip(r-4.5)
evobiR_2.2.tgz(r-4.6-any)evobiR_2.2.tgz(r-4.5-any)
evobiR_2.2.tar.gz(r-4.7-any)evobiR_2.2.tar.gz(r-4.6-any)
evobiR_2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
evobiR/json (API)

# Install 'evobiR' in R:
install.packages('evobiR', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/coleoguy/evobir/issues

Datasets:
  • hym.tree - Hymenoptera phylogenetic tree
  • mite.trait - Phenotype data for mites
  • trees - 10 phylogenetic trees for mites

On CRAN:

Conda:

comparative-methodsevolutionary-biologyphylogenetics

8.14 score 21 stars 124 scripts 32 downloads 3 mentions 18 exports 66 dependencies

Last updated from:a6fea9862f. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE178
source / vignettesOK209
linux-release-x86_64NOTE204
macos-release-arm64NOTE103
macos-oldrel-arm64NOTE121
windows-develNOTE123
windows-releaseNOTE126
windows-oldrelNOTE120
wasm-releaseOK137

Exports:AncCondAncCondFastCalcDCalcPopDcountTreesfix.simmapFuzzyMatchgetNeGetTipRatesmake.simmap2pSAFReOrderAlignmentResSelSampleTreesscaleTreeRatesSlidingWindowSuperMatrixWinCalcD

Dependencies:ade4apebackportscastorcheckmatecliclusterGenerationcodacodetoolscombinatcpp11DEoptimdigestdoParallelexpmfarverforeachfuturefuture.applygenericsggplot2globalsgluegridExtragtableigraphisobanditeratorsjsonlitelabelinglatticelifecyclelistenvmagrittrmapsMASSMatrixmnormtnaturalsortnlmenumDerivoptimParallelosqpparallellyphangornphytoolspixmappkgconfigprogressrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangRSpectraS7scalesscatterplot3dsegmentedseqinrspvctrsviridisviridisLitewithr

Evolutionary biology in R (evobiR) tutorial

Michelle Jonika, Jeffery Demuth, Richard H. Adams, and Heath Blackmon

Rendered fromevolutionary.biology.in.R.Rmdusingknitr::rmarkdownon May 10 2026.

Last update: 2026-03-20
Started: 2015-10-19