Package: ouch 2.20-0
Aaron A. King
ouch: Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Authors:
ouch_2.20-0.tar.gz
ouch_2.20-0.zip(r-4.5)ouch_2.20-0.zip(r-4.4)ouch_2.20-0.zip(r-4.3)
ouch_2.20-0.tgz(r-4.4-x86_64)ouch_2.20-0.tgz(r-4.4-arm64)ouch_2.20-0.tgz(r-4.3-x86_64)ouch_2.20-0.tgz(r-4.3-arm64)
ouch_2.20-0.tar.gz(r-4.5-noble)ouch_2.20-0.tar.gz(r-4.4-noble)
ouch_2.20-0.tgz(r-4.4-emscripten)ouch_2.20-0.tgz(r-4.3-emscripten)
ouch.pdf |ouch.html✨
ouch/json (API)
NEWS
| # Install 'ouch' in R: |
| install.packages('ouch', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kingaa/ouch/issues
- anolis.ssd - Greater Antillean anolis lizard sexual size dimorphism data
- bimac - Anolis bimaculatus lizard size data
- geospiza - Data on Darwin's finches
adaptive-regimebrownian-motionornstein-uhlenbeckornstein-uhlenbeck-modelsouchphylogenetic-comparative-hypothesesphylogenetic-comparative-methodsphylogenetic-datareact
Last updated 4 days agofrom:7d83540f26. Checks:OK: 9. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 04 2024 |
| R-4.5-win-x86_64 | OK | Sep 04 2024 |
| R-4.5-linux-x86_64 | OK | Sep 04 2024 |
| R-4.4-win-x86_64 | OK | Sep 04 2024 |
| R-4.4-mac-x86_64 | OK | Sep 04 2024 |
| R-4.4-mac-aarch64 | OK | Sep 04 2024 |
| R-4.3-win-x86_64 | OK | Sep 04 2024 |
| R-4.3-mac-x86_64 | OK | Sep 04 2024 |
| R-4.3-mac-aarch64 | OK | Sep 04 2024 |
Exports:ape2ouchbootstrapbrowncoefhansenlogLikouchtreepaintplotprintshowsimulatesummaryupdate
Dependencies:subplex
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses | ouch-package ouch ouch,package |
| Greater Antillean anolis lizard sexual size dimorphism data | anolis.ssd |
| Coerce an 'ouch' object to a data frame | as.data.frame.browntree as.data.frame.hansentree as.data.frame.ouchtree as_data_frame |
| Anolis bimaculatus lizard size data | bimac |
| Bootstrapping for uncertainty quantification | bootstrap bootstrap,ANY-method bootstrap,browntree-method bootstrap,hansentree-method bootstrap,missing-method |
| Phylogenetic Brownian motion models | brown browntree-class |
| Model coefficients | coef coef,browntree-method coef,hansentree-method |
| Data on Darwin's finches | geospiza |
| Ornstein-Uhlenbeck models of trait evolution | hansen hansentree-class |
| Log likelihood of a fitted model | logLik logLik,browntree-method logLik,hansentree-method |
| Phylogenetic tree object in 'ouch' format | ape2ouch ouchtree ouchtree-class |
| Painting regimes on a phylogenetic tree | paint |
| 'ouch' plotting functions | plot plot,hansentree-method plot,ouchtree-method |
| Simulations of a phylogenetic trait model | simulate simulate,browntree-method simulate,hansentree-method |
| Summary methods | summary summary,browntree-method summary,hansentree-method |
| Update and refit an 'ouch' model | update update,browntree-method update,hansentree-method |
