Package: bayou 2.3.0
bayou: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Tools for fitting and simulating multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using Bayesian reversible-jump methods.
Authors:
bayou_2.3.0.tar.gz
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bayou.pdf |bayou.html✨
bayou/json (API)
# Install 'bayou' in R: |
install.packages('bayou', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uyedaj/bayou/issues
Last updated 2 months agofrom:b57d7eaff3. Checks:OK: 9. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 27 2024 |
R-4.5-win-x86_64 | OK | Aug 27 2024 |
R-4.5-linux-x86_64 | OK | Aug 27 2024 |
R-4.4-win-x86_64 | OK | Aug 27 2024 |
R-4.4-mac-x86_64 | OK | Aug 27 2024 |
R-4.4-mac-aarch64 | OK | Aug 27 2024 |
R-4.3-win-x86_64 | OK | Aug 27 2024 |
R-4.3-mac-x86_64 | OK | Aug 27 2024 |
R-4.3-mac-aarch64 | OK | Aug 27 2024 |
Exports:bayou.checkModelbayou.likbayou.makeMCMCbayou.mcmcbayou2OUwiecdpoiscombine.chainsdataSimdhalfcauchydlocdsbgelman.RidentifyBranchesload.bayouLposteriormake.powerposteriorFnmake.priormake.refFnmakeBayouModelmakeTransparentOU.likOUphenogramOUwie2bayouparmap.Wpars2simmapphalfcauchyphenogram.densityplotBayouparsplotBranchHeatMapplotOUtreesimplotRegimesplotShiftSummariesplotSimmap.mcmcpriorSimpull.parsqhalfcauchyrdpoisrhalfcauchyrlocrsbset.burninshiftSummariessimmapW
Dependencies:apeassertthatcliclusterGenerationcodacodetoolscolorspacecombinatcpp11denstripDEoptimdeSolvedigestdoParallelexpmfansifarverfastmatchfitdistrplusforeachgeigergenericsggplot2ggseqlogogluegtableigraphisobanditeratorslabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspillarpkgconfigquadprogR6RColorBrewerRcppRcppArmadillorlangscalesscatterplot3dsubplexsurvivaltibbleutf8vctrsviridisLitewithr