Package: hillR 0.5.3

Daijiang Li

hillR: Diversity Through Hill Numbers

Calculate taxonomic, functional and phylogenetic diversity measures through Hill Numbers proposed by Chao, Chiu and Jost (2014) <doi:10.1146/annurev-ecolsys-120213-091540>.

Authors:Daijiang Li

hillR_0.5.3.tar.gz
hillR_0.5.3.zip(r-4.5)hillR_0.5.3.zip(r-4.4)hillR_0.5.3.zip(r-4.3)
hillR_0.5.3.tgz(r-4.4-any)hillR_0.5.3.tgz(r-4.3-any)
hillR_0.5.3.tar.gz(r-4.5-noble)hillR_0.5.3.tar.gz(r-4.4-noble)
hillR_0.5.3.tgz(r-4.4-emscripten)hillR_0.5.3.tgz(r-4.3-emscripten)
hillR.pdf |hillR.html✨
hillR/json (API)
NEWS

# Install 'hillR' in R:

install.packages('hillR', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/daijiang/hillr/issues

On CRAN:

biodiversity hill-numbers

9 exports 30 stars 3.51 score 73 dependencies 3 dependents 7 mentions 149 scripts 546 downloads

Last updated 5 months agofrom:096d635048. Checks:OK: 7. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Aug 21 2024
R-4.5-win	OK	Aug 21 2024
R-4.5-linux	OK	Aug 21 2024
R-4.4-win	OK	Aug 21 2024
R-4.4-mac	OK	Aug 21 2024
R-4.3-win	OK	Aug 21 2024
R-4.3-mac	OK	Aug 21 2024

Exports:hill_func hill_func_parti hill_func_parti_pairwise hill_phylo hill_phylo_parti hill_phylo_parti_pairwise hill_taxa hill_taxa_parti hill_taxa_parti_pairwise

Dependencies:abind ade4 ape cli cluster clusterGeneration coda codetools colorspace combinat cpp11 DEoptim deSolve digest doParallel expm fansi farver fastmatch FD foreach geiger generics geometry ggplot2 ggseqlogo glue gtable igraph isoband iterators labeling lattice lifecycle linprog lpSolve magic magrittr maps MASS Matrix mgcv mnormt munsell mvtnorm ncbit nlme numDeriv optimParallel permute phangorn phytools pillar pixmap pkgconfig plyr quadprog R6 RColorBrewer Rcpp RcppArmadillo RcppProgress rlang scales scatterplot3d sp subplex tibble utf8 vctrs vegan viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Functional diversity through Hill Numbers	hill_func
Decompostion of functional diversity through Hill Numbers	hill_func_parti
Pairwise comparisons for all sites.	hill_func_parti_pairwise
Phylogenetic diversity through Hill Numbers	hill_phylo
Phylogenetic diversity of multiple sites	hill_phylo_parti
Pairwise phylogenetic diversity through Hill numbers	hill_phylo_parti_pairwise
Taxonomic diversity through Hill Numbers	hill_taxa
Decompostion of Taxonomic diversity through Hill Numbers	hill_taxa_parti
Pairwise comparisons for all sites	hill_taxa_parti_pairwise
hillR: Diversity Through Hill Numbers	hillR-package hillR