{
  "_id": "6a50bde089c83ec243a302db",
  "Package": "hillR",
  "Type": "Package",
  "Title": "Diversity Through Hill Numbers",
  "Version": "0.6.0",
  "Date": "2025-11-10",
  "Authors@R": "person(given = \"Daijiang\",\nfamily = \"Li\",\nrole = c(\"aut\", \"cre\"),\nemail = \"daijianglee@gmail.com\")",
  "Maintainer": "Daijiang Li <daijianglee@gmail.com>",
  "Description": "Calculate taxonomic, functional and phylogenetic diversity\nmeasures through Hill Numbers proposed by Chao, Chiu and Jost\n(2014) <doi:10.1146/annurev-ecolsys-120213-091540>.",
  "License": "MIT + file LICENSE",
  "RoxygenNote": "7.3.3",
  "URL": "https://github.com/daijiang/hillR",
  "BugReports": "https://github.com/daijiang/hillR/issues",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "libglpk-dev make libxml2-dev",
  "Repository": "https://phylotastic.r-universe.dev",
  "Date/Publication": "2025-11-11 19:05:05 UTC",
  "RemoteUrl": "https://github.com/daijiang/hillR",
  "RemoteRef": "HEAD",
  "RemoteSha": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-10 09:36:38 UTC",
    "User": "root"
  },
  "Author": "Daijiang Li [aut, cre]",
  "_user": "phylotastic",
  "_type": "src",
  "_file": "hillR_0.6.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/c362fdf9c011af080009d3c172d088ab3add5eb0274cd5a5d63034ff91b350c2",
  "_filesize": 140740,
  "_sha256": "c362fdf9c011af080009d3c172d088ab3add5eb0274cd5a5d63034ff91b350c2",
  "_expires": "2026-10-18T09:39:42.000Z",
  "_created": "2026-07-10T09:36:38.000Z",
  "_published": "2026-07-10T09:39:44.686Z",
  "_jobs": [
    {
      "job": 86332073784,
      "time": 146,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8223847367"
    },
    {
      "job": 86332073781,
      "time": 147,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8223847860"
    },
    {
      "job": 86332073752,
      "time": 71,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8223820200"
    },
    {
      "job": 86332073778,
      "time": 108,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8223833776"
    },
    {
      "job": 86331516433,
      "time": 183,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8223793621"
    },
    {
      "job": 86332073773,
      "time": 133,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8223842437"
    },
    {
      "job": 86332073801,
      "time": 110,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8223834787"
    },
    {
      "job": 86332073816,
      "time": 81,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8223823510"
    },
    {
      "job": 86332073935,
      "time": 76,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8223821829"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875",
  "_status": "success",
  "_upstream": "https://github.com/daijiang/hillR",
  "_commit": {
    "id": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
    "author": "daijiang <daijianglee@gmail.com>",
    "committer": "daijiang <daijianglee@gmail.com>",
    "message": "remove old author field\n",
    "time": 1762887905
  },
  "_maintainer": {
    "name": "Daijiang Li",
    "email": "daijianglee@gmail.com",
    "login": "daijiang",
    "description": "",
    "uuid": 1696911
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1",
      "role": "Depends"
    },
    {
      "package": "FD",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "ade4",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "geiger",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "betapart",
      "role": "Suggests"
    }
  ],
  "_owner": "daijiang",
  "_selfowned": false,
  "_usedby": 3,
  "_updates": [
    {
      "week": "2025-46",
      "n": 3
    }
  ],
  "_tags": [],
  "_topics": [
    "biodiversity",
    "hill-numbers"
  ],
  "_stars": 36,
  "_contributors": [
    {
      "user": "daijiang",
      "count": 51,
      "uuid": 1696911
    },
    {
      "user": "akpaulson",
      "count": 3,
      "uuid": 64931666
    },
    {
      "user": "bisaloo",
      "count": 2,
      "uuid": 10783929
    },
    {
      "user": "katrinleinweber",
      "count": 1,
      "uuid": 9948149
    },
    {
      "user": "p-neves",
      "count": 1,
      "uuid": 16014958
    },
    {
      "user": "ajrominger",
      "count": 1,
      "uuid": 2481785
    }
  ],
  "_userbio": {
    "uuid": 1652822,
    "type": "organization",
    "name": "phylotastic",
    "followers": 5
  },
  "_downloads": {
    "count": 708,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hillR"
  },
  "_mentions": 7,
  "_devurl": "https://github.com/daijiang/hillr",
  "_searchresults": 242,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hillR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/daijiang/hillr",
  "_realowner": "daijiang",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.4.0",
      "date": "2018-11-19"
    },
    {
      "version": "0.5.0",
      "date": "2020-07-07"
    },
    {
      "version": "0.5.1",
      "date": "2021-03-02"
    },
    {
      "version": "0.5.2",
      "date": "2023-08-20"
    }
  ],
  "_exports": [
    "hill_func",
    "hill_func_parti",
    "hill_func_parti_pairwise",
    "hill_phylo",
    "hill_phylo_parti",
    "hill_phylo_parti_pairwise",
    "hill_taxa",
    "hill_taxa_parti",
    "hill_taxa_parti_pairwise"
  ],
  "_help": [
    {
      "page": "hill_func",
      "title": "Functional diversity through Hill Numbers",
      "topics": [
        "hill_func"
      ]
    },
    {
      "page": "hill_func_parti",
      "title": "Decompostion of functional diversity through Hill Numbers",
      "topics": [
        "hill_func_parti"
      ]
    },
    {
      "page": "hill_func_parti_pairwise",
      "title": "Pairwise comparisons for all sites.",
      "topics": [
        "hill_func_parti_pairwise"
      ]
    },
    {
      "page": "hill_phylo",
      "title": "Phylogenetic diversity through Hill Numbers",
      "topics": [
        "hill_phylo"
      ]
    },
    {
      "page": "hill_phylo_parti",
      "title": "Phylogenetic diversity of multiple sites",
      "topics": [
        "hill_phylo_parti"
      ]
    },
    {
      "page": "hill_phylo_parti_pairwise",
      "title": "Pairwise phylogenetic diversity through Hill numbers",
      "topics": [
        "hill_phylo_parti_pairwise"
      ]
    },
    {
      "page": "hill_taxa",
      "title": "Taxonomic diversity through Hill Numbers",
      "topics": [
        "hill_taxa"
      ]
    },
    {
      "page": "hill_taxa_parti",
      "title": "Decompostion of Taxonomic diversity through Hill Numbers",
      "topics": [
        "hill_taxa_parti"
      ]
    },
    {
      "page": "hill_taxa_parti_pairwise",
      "title": "Pairwise comparisons for all sites",
      "topics": [
        "hill_taxa_parti_pairwise"
      ]
    },
    {
      "page": "hillR",
      "title": "hillR: Diversity Through Hill Numbers",
      "topics": [
        "hillR-package",
        "hillR"
      ]
    }
  ],
  "_readme": "https://github.com/daijiang/hillR/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "ade4",
    "ape",
    "backports",
    "checkmate",
    "cli",
    "cluster",
    "clusterGeneration",
    "coda",
    "codetools",
    "colorspace",
    "combinat",
    "cpp11",
    "DEoptim",
    "deSolve",
    "digest",
    "doParallel",
    "expm",
    "FD",
    "foreach",
    "future",
    "future.apply",
    "geiger",
    "generics",
    "geometry",
    "globals",
    "glue",
    "igraph",
    "iterators",
    "lattice",
    "lifecycle",
    "linprog",
    "listenv",
    "lpSolve",
    "magic",
    "magrittr",
    "maps",
    "MASS",
    "Matrix",
    "mgcv",
    "mnormt",
    "mvtnorm",
    "ncbit",
    "nlme",
    "numDeriv",
    "optimParallel",
    "osqp",
    "parallelly",
    "permute",
    "phangorn",
    "phytools",
    "pillar",
    "pixmap",
    "pkgconfig",
    "plyr",
    "progressr",
    "Rcpp",
    "RcppArmadillo",
    "RcppProgress",
    "rlang",
    "S7",
    "scatterplot3d",
    "sp",
    "subplex",
    "tibble",
    "utf8",
    "vctrs",
    "vegan"
  ],
  "_score": 8.137398424873338,
  "_indexed": false,
  "_nocasepkg": "hillr",
  "_universes": [
    "phylotastic"
  ],
  "_indexurl": "https://daijiang.r-universe.dev/hillR",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.6.0",
      "date": "2026-07-10T09:39:02.000Z",
      "distro": "resolute",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/64ab56457ede214f90e7bcadc1f857a49ad9b043a6b7f534ce856ca5a9dff36d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.6.0",
      "date": "2026-07-10T09:39:04.000Z",
      "distro": "resolute",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/7c91eb2eecbdd0c46b74c2a8c20b2e1eeabb6b432e7831146e9feebcf082b1c9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.6.0",
      "date": "2026-07-10T09:37:53.000Z",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/aea0e9ead780b74ce0ebc3bca42de4ae95faf09d9889a5ff368731f1bce2367b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.6.0",
      "date": "2026-07-10T09:38:28.000Z",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/14a31602cc807190cd2a288a3a2789ca3e0a31fc40ed83085e0d0d1b9c139c7c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.6.0",
      "date": "2026-07-10T09:39:04.000Z",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/bffee1cd4142886367a67e20aa4855249d2132969a39b0d493c837ffbed564b2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.6.0",
      "date": "2026-07-10T09:38:25.000Z",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/3718a19965e07f764a984a342a0764ee9b7250cce7aaa97709b5e2cf05c8f66c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.6.0",
      "date": "2026-07-10T09:37:52.000Z",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/642a1cfb3157811ad04da70053040a585a0a127467dd0a3f390de55b6987c982",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.6.0",
      "date": "2026-07-10T09:37:48.000Z",
      "commit": "e34db45b3cde57e82a2c1f11a6c67f1c4ee84712",
      "fileid": "https://r2.ropensci.org/764e1bea90ac043b1d4e900c271392c39b20b09d137f6b7d840fd42079b01c81",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/29083441875"
    }
  ]
}