NEWS
hillR 0.5.0 (2020-07-07)
- Skip tests that used
vegetarian
package, which was off CRAN.
hill_phylo
has an argument return_dt
now, so that users can decide whether to return the Phylogenetic Hill numbers Dt, default is FALSE
.
hill_phylo
set of functions are now much faster after getting rid of ade4::newick2phylog()
.
- Replaced all
.
in arguments with _
to standardize styles.
hill_phylo_parti_pairwise
now calculate the node/tips by site matrix first to speed things up.
- Added progress bar to all
hill_xxx_parti_pairwise
functions with .progress
argument, which can be set to FALSE
to turn it off.
hillR 0.3.0
- Added a
NEWS.md
file to track changes to the package.
hill_func
and hill_func_parti
no longer standardize distance matrix to have max value of 1 by default.
- set
stand_dij = TRUE
if want to do so.
hill_func_parti
function now reports site similarity instead of dissimilarity, to be consistent with the hill_taxa_parti
functions. Make sure to change your interpretations.
- Added
hill_phylo
functions.