Package: treedata.table 0.1.1

Cristian Roman-Palacios

treedata.table: Manipulation of Matched Phylogenies and Data using 'data.table'

An implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a 'data.table' syntax when performing operations on the trait dataset within the treedata.table object.

Authors:Josef Uyeda [aut], Cristian Roman-Palacios [aut, cre], April Wright [aut], Luke Harmon [ctb], Hugo Gruson [rev], Kari Norman [rev]

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treedata.table.pdf |treedata.table.html✨
treedata.table/json (API)

# Install 'treedata.table' in R:
install.packages('treedata.table', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/treedata.table/issues

Datasets:

On CRAN:

10 exports 7 stars 1.46 score 60 dependencies 24 scripts 148 downloads

Last updated 3 years agofrom:33d0086a42. Checks:OK: 5 NOTE: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKAug 25 2024
R-4.5-winNOTEAug 25 2024
R-4.5-linuxNOTEAug 25 2024
R-4.4-winOKAug 25 2024
R-4.4-macOKAug 25 2024
R-4.3-winOKAug 25 2024
R-4.3-macOKAug 25 2024

Exports:as.treedata.tabledetectAllCharactersdetectCharacterTypedroptreedata.tableextractVectorfilterMatrixforceNameshasNamespulltreedata.tabletdt

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDEoptimdeSolvedigestdoParallelexpmfansifarverfastmatchforeachgeigergenericsggplot2ggseqlogogluegtableigraphisobanditeratorslabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspillarpkgconfigquadprogR6RColorBrewerRcpprlangscalesscatterplot3dsubplextibbleutf8vctrsviridisLitewithr

Additional Functions for Manipulating Data in treedata.table

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromD_AdditionalFunctions_treedata.table.Rmdusingknitr::rmarkdownon Aug 25 2024.

Last update: 2021-09-10
Started: 2020-09-07

Breve Introducción al Paquete treedata.table

Cristian Roman-Palacios, April Wright, Josef Uyeda

Rendered fromAB_treedata.table_intro_spanish.Rmdusingknitr::rmarkdownon Aug 25 2024.

Last update: 2021-09-10
Started: 2020-09-07

Getting Started With The treedata.table Package

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromAA_treedata.table_intro_english.Rmdusingknitr::rmarkdownon Aug 25 2024.

Last update: 2021-09-10
Started: 2020-09-07

Partially Matching of Trait Data and Tree(s) in treedata.table

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromC_PartialMatching.Rmdusingknitr::rmarkdownon Aug 25 2024.

Last update: 2021-09-10
Started: 2020-09-07

Working With multiPhylo Objects in treedata.table

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromB_multiphylo_treedata.table.Rmdusingknitr::rmarkdownon Aug 25 2024.

Last update: 2021-09-10
Started: 2020-09-07