Package: RevGadgets 1.2.1

Carrie Tribble

RevGadgets: Visualization and Post-Processing of 'RevBayes' Analyses

Processes and visualizes the output of complex phylogenetic analyses from the 'RevBayes' phylogenetic graphical modeling software.

Authors:Carrie Tribble [aut, cre], Michael R. May [aut], William A. Freyman [aut], Michael J. Landis [aut], Lim Jun Ying [aut], Joelle Barido-Sottani [aut], Andrew Magee [aut], Bjorn Tore Kopperud [aut], Sebastian Hohna [aut], Nagashima Kengo [ctb], Schliep Klaus [ctb], Ronja J. Billenstein [aut]

RevGadgets_1.2.1.tar.gz
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RevGadgets_1.2.1.tgz(r-4.4-any)RevGadgets_1.2.1.tgz(r-4.3-any)
RevGadgets_1.2.1.tar.gz(r-4.5-noble)RevGadgets_1.2.1.tar.gz(r-4.4-noble)
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RevGadgets.pdf |RevGadgets.html✨
RevGadgets/json (API)
NEWS

# Install 'RevGadgets' in R:
install.packages('RevGadgets', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/revbayes/revgadgets/issues

On CRAN:

6.39 score 13 stars 211 scripts 227 downloads 1 mentions 36 exports 100 dependencies

Last updated 12 months agofrom:2a7ce495ae. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winOKOct 25 2024
R-4.5-linuxOKOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macOKOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macOKOct 25 2024

Exports:calculateShiftBayesFactorcolFuncombineTracesdensiTreeWithBranchDatadropTipgeom_stepribbonGeomStepribbongetMAPmatchNodesplotAncStatesMAPplotAncStatesPieplotDiversityOBDPplotDivRatesplotFBDTreeplotHiSSEplotMassExtinctionsplotMuSSEplotPopSizesplotPostPredStatsplotTraceplotTreeposteriorSamplesToParametricPriorprocessAncStatesprocessBranchDataprocessDivRatesprocessPopSizesprocessPostPredStatsprocessSSEreadOBDPreadTracereadTreesremoveBurninrerootPhylosetMRFGlobalScaleHyperpriorNShiftssimulateMRFsummarizeTrace

Dependencies:apeaplotbase64enccliclusterGenerationcodacodetoolscolorspacecombinatcommonmarkcpp11curldeeptimeDEoptimdigestdoParalleldplyrexpmfansifarverforeachfsgenericsggfittextggforceggfunggimagegginnardsggplot2ggplotifyggppggtreegluegridExtragridGraphicsgridtextgrImport2gtableigraphisobanditeratorsjpegjsonlitelabelinglatticelazyevallifecyclelubridatemagickmagrittrmapsmarkdownMASSMatrixmgcvmnormtmunsellnlmenumDerivoptimParallelpatchworkphangornphytoolspillarpkgconfigplyrpngpolyclippolynompurrrquadprogR6RColorBrewerRcppRcppEigenreshaperlangscalesscatterplot3dshadesstringistringrsystemfontstibbletidyrtidyselecttidytreetimechangetreeiotweenrutf8vctrsviridisLitewithrxfunXMLxml2xtsyulab.utilszoo