Introduction | First steps | Exploratory data analysis
This package is considered a duplicate. The official version of this package is found at:https://adeverse.r-universe.dev/adephylo
Package: adephylo 1.1-17
Aurélie Siberchicot
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method
Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.
Authors:
adephylo_1.1-17.tar.gz
adephylo_1.1-17.zip(r-4.7)adephylo_1.1-17.zip(r-4.6)adephylo_1.1-17.zip(r-4.5)
adephylo_1.1-17.tgz(r-4.6-x86_64)adephylo_1.1-17.tgz(r-4.6-arm64)adephylo_1.1-17.tgz(r-4.5-x86_64)adephylo_1.1-17.tgz(r-4.5-arm64)
adephylo_1.1-17.tar.gz(r-4.7-arm64)adephylo_1.1-17.tar.gz(r-4.7-x86_64)adephylo_1.1-17.tar.gz(r-4.6-arm64)adephylo_1.1-17.tar.gz(r-4.6-x86_64)
adephylo_1.1-17.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
adephylo/json (API)
| # Install 'adephylo' in R: |
| install.packages('adephylo', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/adeverse/adephylo/issues
Datasets:
- carni19 - Phylogeny and quantative trait of carnivora
- carni70 - Phylogeny and quantitative traits of carnivora
- lizards - Phylogeny and quantitative traits of lizards
- maples - Phylogeny and quantitative traits of flowers
- mjrochet - Phylogeny and quantitative traits of teleos fishes
- palm - Phylogenetic and quantitative traits of amazonian palm trees
- procella - Phylogeny and quantitative traits of birds
- tithonia - Phylogeny and quantitative traits of flowers
- ungulates - Phylogeny and quantitative traits of ungulates.
Last updated from:bc262d7bc6. Checks:13 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 261 | ||
| linux-devel-x86_64 | OK | 270 | ||
| source / vignettes | OK | 301 | ||
| linux-release-arm64 | OK | 295 | ||
| linux-release-x86_64 | OK | 291 | ||
| macos-release-arm64 | OK | 152 | ||
| macos-release-x86_64 | OK | 260 | ||
| macos-oldrel-arm64 | OK | 126 | ||
| macos-oldrel-x86_64 | OK | 229 | ||
| windows-devel | OK | 151 | ||
| windows-release | OK | 144 | ||
| windows-oldrel | OK | 174 | ||
| wasm-release | OK | 283 |
Exports:.tipToRootabouheif.moranbullseyedistRootdistTipslistDDlistTipsme.phylomoran.idxorthobasis.phyloorthogramppcaproxTipssp.tipstable.phylo4dtreePart
Dependencies:ade4adegenetapeaskpassbase64encbootbslibcachemcliclustercommonmarkcpp11crayoncurldigestdplyrfarverfastmapfontawesomefsgenericsggplot2gluegtablehmshtmltoolshttpuvhttrigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimenlmeopensslotelpermutephylobasepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangrnclRNeXMLS7sassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselectutf8uuidvctrsveganviridisLitewithrXMLxml2xtable
