Package: adephylo 1.1-16

Aurélie Siberchicot

adephylo: Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.

Authors:Stéphane Dray [aut], Thibaut Jombart [aut], Anders Ellern Bilgrau [ctb], Aurélie Siberchicot [ctb, cre]

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adephylo.pdf |adephylo.html✨
adephylo/json (API)

Peer review:

Bug tracker:https://github.com/adeverse/adephylo/issues

On CRAN:

16 exports 9 stars 2.05 score 88 dependencies 3 dependents 306 scripts 9.0k downloads

Last updated 2 months agofrom:d234d0d04f. Checks:OK: 8 NOTE: 1. Indexed: no.

Exports:.tipToRootabouheif.moranbullseyedistRootdistTipslistDDlistTipsme.phylomoran.idxorthobasis.phyloorthogramppcaproxTipssp.tipstable.phylo4dtreePart

Dependencies:ade4adegenetapeaskpassbase64encbootbslibcachemcliclustercolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2gluegtablehmshtmltoolshttpuvhttrigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpermutephylobasepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangrnclRNeXMLsassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselectutf8uuidvctrsveganviridisLitewithrXMLxml2xtable