Package: adephylo 1.1-17
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method
Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.
Authors:
adephylo_1.1-17.tar.gz
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adephylo.pdf |adephylo.html✨
adephylo/json (API)
# Install 'adephylo' in R: |
install.packages('adephylo', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/adeverse/adephylo/issues
- carni19 - Phylogeny and quantative trait of carnivora
- carni70 - Phylogeny and quantitative traits of carnivora
- lizards - Phylogeny and quantitative traits of lizards
- maples - Phylogeny and quantitative traits of flowers
- mjrochet - Phylogeny and quantitative traits of teleos fishes
- palm - Phylogenetic and quantitative traits of amazonian palm trees
- procella - Phylogeny and quantitative traits of birds
- tithonia - Phylogeny and quantitative traits of flowers
- ungulates - Phylogeny and quantitative traits of ungulates.
On CRAN:adephylo-1.1-16(2023-10-06)
Last updated 19 days agofrom:a8e9574337. Checks:10 OK. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Jan 29 2025 |
R-4.5-win-x86_64 | OK | Jan 29 2025 |
R-4.5-mac-aarch64 | OK | Jan 29 2025 |
R-4.5-linux-x86_64 | OK | Jan 29 2025 |
R-4.4-win-x86_64 | OK | Jan 29 2025 |
R-4.4-mac-x86_64 | OK | Jan 29 2025 |
R-4.4-mac-aarch64 | OK | Jan 29 2025 |
R-4.3-win-x86_64 | OK | Jan 29 2025 |
R-4.3-mac-x86_64 | OK | Jan 29 2025 |
R-4.3-mac-aarch64 | OK | Jan 29 2025 |
Exports:.tipToRootabouheif.moranbullseyedistRootdistTipslistDDlistTipsme.phylomoran.idxorthobasis.phyloorthogramppcaproxTipssp.tipstable.phylo4dtreePart
Dependencies:ade4adegenetapeaskpassbase64encbootbslibcachemcliclustercolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2gluegtablehmshtmltoolshttpuvhttrigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpermutephylobasepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangrnclRNeXMLsassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselectutf8uuidvctrsveganviridisLitewithrXMLxml2xtable
Citation
To cite the adephylo package:
Jombart T., Dray S. (2008). adephylo: exploratory analyses for the phylogenetic comparative method.
Corresponding BibTeX entry:
@Article{, title = {adephylo: exploratory analyses for the phylogenetic comparative method.}, journal = {Bioinformatics}, year = {2010}, author = {Thibaut Jombart and St\'ephane Dray}, volume = {26}, pages = {1907-1909}, doi = {10.1093/bioinformatics/btq292}, }
Readme and manuals
adephylo
Exploratory Analyses for the Phylogenetic Comparative Method
Please note! Since January 2024, this repository has belonged to the adeverse organization.
To avoid confusion, we strongly recommend updating any existing local clones to point to the new
repository URL. You can do this by using git remote
on the command line:
git remote set-url origin git@github.com:adeverse/adephylo.git
or
git remote set-url origin https://github.com/adeverse/adephylo.git
Installing adephylo adephylo
To install the development version from github:
library(devtools)
install_github("adeverse/adephylo")
The stable version can be installed from CRAN using:
install.packages("adephylo")
Once installed, the package can be loaded using:
library("adephylo")
Development team
Authors/developers
adephylo is developed by:
- Thibaut Jombart
- Stéphane Dray
- Anders Ellern Bilgrau