Package: adephylo 1.1-17

Aurélie Siberchicot

adephylo: Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.

Authors:Stéphane Dray [aut], Thibaut Jombart [aut], Anders Ellern Bilgrau [ctb], Aurélie Siberchicot [ctb, cre]

adephylo_1.1-17.tar.gz
adephylo_1.1-17.zip(r-4.7)adephylo_1.1-17.zip(r-4.6)adephylo_1.1-17.zip(r-4.5)
adephylo_1.1-17.tgz(r-4.6-x86_64)adephylo_1.1-17.tgz(r-4.6-arm64)adephylo_1.1-17.tgz(r-4.5-x86_64)adephylo_1.1-17.tgz(r-4.5-arm64)
adephylo_1.1-17.tar.gz(r-4.7-arm64)adephylo_1.1-17.tar.gz(r-4.7-x86_64)adephylo_1.1-17.tar.gz(r-4.6-arm64)adephylo_1.1-17.tar.gz(r-4.6-x86_64)
adephylo_1.1-17.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
adephylo/json (API)

# Install 'adephylo' in R:
install.packages('adephylo', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/adeverse/adephylo/issues

Datasets:
  • carni19 - Phylogeny and quantative trait of carnivora
  • carni70 - Phylogeny and quantitative traits of carnivora
  • lizards - Phylogeny and quantitative traits of lizards
  • maples - Phylogeny and quantitative traits of flowers
  • mjrochet - Phylogeny and quantitative traits of teleos fishes
  • palm - Phylogenetic and quantitative traits of amazonian palm trees
  • procella - Phylogeny and quantitative traits of birds
  • tithonia - Phylogeny and quantitative traits of flowers
  • ungulates - Phylogeny and quantitative traits of ungulates.

On CRAN:

Conda:

8.56 score 10 stars 4 packages 520 scripts 5.8k downloads 42 mentions 16 exports 87 dependencies

Last updated from:bc262d7bc6. Checks:13 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK171
linux-devel-x86_64OK204
source / vignettesOK214
linux-release-arm64OK173
linux-release-x86_64OK194
macos-release-arm64OK141
macos-release-x86_64OK356
macos-oldrel-arm64OK136
macos-oldrel-x86_64OK293
windows-develOK151
windows-releaseOK156
windows-oldrelOK144
wasm-releaseOK126

Exports:.tipToRootabouheif.moranbullseyedistRootdistTipslistDDlistTipsme.phylomoran.idxorthobasis.phyloorthogramppcaproxTipssp.tipstable.phylo4dtreePart

Dependencies:ade4adegenetapeaskpassbase64encbootbslibcachemcliclustercommonmarkcpp11crayoncurldigestdplyrfarverfastmapfontawesomefsgenericsggplot2gluegtablehmshtmltoolshttpuvhttrigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimenlmeopensslotelpermutephylobasepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangrnclRNeXMLS7sassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselectutf8uuidvctrsveganviridisLitewithrXMLxml2xtable

adephylo: exploratory analyses for the phylogenetic comparative method

Rendered fromadephylo.Rnwusingutils::Sweaveon May 06 2026.

Last update: 2023-10-03
Started: 2015-08-25