| Geometric morphometric analyses for 2D/3D data | geomorph-package geomorph |
| Convert landmark data matrix into array (p x k x n) | arrayspecs |
| Analysis of bilateral symmetry | bilat.symmetry |
| Build 3D surface template | buildtemplate |
| Combine separate landmark configurations | combine.subsets |
| Comparisons of Effect Sizes from Modularity Analyses | compare.CR |
| Comparing net rates of shape evolution on phylogenies | compare.evol.rates |
| Comparing net rates of evolution among traits on phylogenies | compare.multi.evol.rates |
| Comparisons of Phylogenetic Signal Effect Sizes | compare.physignal.z |
| Comparisons of Effect Sizes from Partial Least Squares | compare.pls |
| Comparisons of Effect Sizes from Overall Integration Analyses | compare.ZVrel |
| Subset landmark coordinates via a factor | coords.subset |
| Define links between landmarks | define.links |
| Define modules (landmark partitions) | define.modules |
| Select points to "slide" along curves | define.sliders |
| Calculate semilandmarks along a curve | digit.curves |
| Digitize 3D landmarks on mesh3d object | digit.fixed |
| Digitize 2D landmarks on .jpg files | digitize2d |
| Digitize 3D fixed landmarks and surface semilandmarks | digitsurface |
| Edit 3D template | editTemplate |
| Estimate locations of missing landmarks | estimate.missing |
| Extended Phylogenetic ANOVA/regression for Procrustes shape variables | extended.pgls |
| Identify specimen closest to the mean of a set of Procrustes shape variables | findMeanSpec |
| Rotate a subset of 2D landmarks to common articulation angle | fixed.angle |
| Create a data frame with shape data | geomorph.data.frame |
| Quantify global integration relative to self-similarity | globalIntegration |
| This function is a wrapper for the function measurement.error in RRPP | gm.measurement.error |
| Principal and phylogenetically-aligned components analysis of shape data | gm.prcomp |
| Generalized Procrustes analysis of points, curves, and surfaces | gpagen |
| Set up parameters for grids, points, and links in plotRefToTarget | gridPar |
| Landmark data from hummingbird bills (includes sliding semilandmarks on curves) | hummingbirds |
| Quantify morphological integration between modules | integration.test |
| Quantify integration in a set of traits | integration.Vrel |
| Calculate linear distances between landmarks | interlmkdist |
| Head and tail shapes of larval salamanders | larvalMorph |
| Dorsal head shape data of lizards | lizards |
| Convert geomorph plots to ggplot objects | make_ggplot |
| Evaluate the degree of modular signal in shape data | modularity.test |
| Morphological disparity for one or more groups of specimens | morphol.disparity |
| Landmarks on mosquito wings | mosquito |
| Estimate mean shape for a set of aligned specimens | mshape |
| Handle missing values in rrpp.data.frame objects | na.omit.geomorph.data.frame |
| Quantify phylogenetic morphological integration between two or more sets of variables under Brownian motion | phylo.integration |
| Evaluate the degree of phylogenetic modular signal in Procrustes shape variables | phylo.modularity |
| Assessing phylogenetic signal in Procrustes shape variables | physignal |
| Assessing dimensions of phylogenetic signal in Procrustes shape variables | physignal.eigen |
| Assessing phylogenetic signal effect size in Procrustes shape variables | physignal.z |
| Pick points in geomorph scatterplots to visualize shape variation | picknplot.shape |
| Landmark data from Plethodon salamander heads | plethodon |
| Head shape and food use data from Plethodon salamanders | plethShapeFood |
| Head shape and phylogenetic relationships for several Plethodon salamander species | plethspecies |
| Plot Function for geomorph | plot.bilat.symmetry |
| Plot Function for geomorph | plot.CR |
| Plot Function for geomorph | plot.CR.phylo |
| Plot Function for geomorph | plot.evolrate |
| Plot Function for geomorph | plot.gm.prcomp |
| Plot Function for geomorph | plot.gpagen |
| Plot Function for geomorph | plot.mshape |
| Plot Function for geomorph | plot.physignal |
| Plot Function for geomorph | plot.physignal.eigen |
| Plot Function for geomorph | plot.physignal.z |
| Plot Function for geomorph | plot.pls |
| Plot Function for geomorph | plot.procD.lm |
| Plotting to assist visualization of shape-size covariation (allometry) | plotAllometry |
| Plot landmark coordinates for all specimens | plotAllSpecimens |
| Find potential outliers | plotOutliers |
| Plot shape differences between a reference and target specimen | plotRefToTarget |
| Plot 3D specimen, fixed landmarks and surface semilandmarks | plotspec |
| Print/Summary Function for geomorph | print.bilat.symmetry |
| Print/Summary Function for geomorph | print.combined.set |
| Print/Summary Function for geomorph | print.compare.CR |
| Print/Summary Function for geomorph | print.compare.physignal.z |
| Print/Summary Function for geomorph | print.compare.pls |
| Print/Summary function for geomorph | print.compare.ZVrel |
| Print/Summary Function for geomorph | print.CR |
| Print/Summary Function for geomorph | print.CR.phylo |
| Print/Summary Function for geomorph | print.evolrate |
| Print/Summary Function for geomorph | print.evolrate1 |
| Print/Summary function for geomorph | print.geomorphShapes |
| Print/Summary function for geomorph | print.gm.prcomp |
| Print/Summary Function for geomorph | print.gpagen |
| Print/Summary Function for geomorph | print.morphol.disparity |
| Print/Summary Function for geomorph | print.physignal |
| Print/Summary Function for geomorph | print.physignal.eigen |
| Print/Summary Function for geomorph | print.physignal.z |
| Print/Summary Function for geomorph | print.pls |
| Print/Summary Function for geomorph | print.procD.lm |
| Procrustes ANOVA/regression for Procrustes shape variables | procD.lm |
| Phylogenetic ANOVA/regression for Procrustes shape variables | procD.pgls |
| Landmarks on pupfish | pupfish |
| Landmarks on pupfish | pupfish.ws |
| Landmark data from dataset rat | ratland |
| Read landmark data from Morphologika file(s) | read.morphologika |
| Read mesh data (vertices and faces) from ply files | read.ply |
| Read landmark data matrix from fcsv file | readland.fcsv |
| Read landmark data matrix from nts file | readland.nts |
| Read landmark data from a shapes object (StereoMorph) | readland.shapes |
| Read landmark data from tps file | readland.tps |
| Read and combine multiple nts files | readmulti.nts |
| Read and combine multiple tps files | readmulti.tps |
| Rotate or flip landmark or coordinate configurations | rotate.coords |
| 3D scan of a scallop shell from a .ply file in mesh3d format | scallopPLY |
| Landmark data from scallop shells | scallops |
| Shape prediction from numeric predictors | shape.predictor |
| Update Plots with Convex Hulls for Groups | shapeHulls |
| Print/Summary Function for geomorph | summary.bilat.symmetry |
| Print/Summary Function for geomorph | summary.combined.set |
| Print/Summary Function for geomorph | summary.compare.CR |
| Print/Summary Function for geomorph | summary.compare.physignal.z |
| Print/Summary Function for geomorph | summary.compare.pls |
| Print/Summary Function for geomorph | summary.compare.ZVrel |
| Print/Summary Function for geomorph | summary.CR |
| Print/Summary Function for geomorph | summary.CR.phylo |
| Print/Summary Function for geomorph | summary.evolrate |
| Print/Summary Function for geomorph | summary.evolrate1 |
| Print/Summary Function for geomorph | summary.geomorphShapes |
| Print/Summary Function for geomorph | summary.gm.prcomp |
| Print/Summary Function for geomorph | summary.gpagen |
| Print/Summary Function for geomorph | summary.morphol.disparity |
| Print/Summary Function for geomorph | summary.physignal |
| Print/Summary Function for geomorph | summary.physignal.eigen |
| Print/Summary Function for geomorph | summary.physignal.z |
| Print/Summary Function for geomorph | summary.pls |
| Print/Summary Function for geomorph | summary.procD.lm |
| Two-block partial least squares analysis for Procrustes shape variables | two.b.pls |
| Convert (p x k x n) data array into 2D data matrix | two.d.array |
| Creates a mesh3d object warped to the mean shape | warpRefMesh |
| Creates a 2D outline warped to the mean shape | warpRefOutline |
| Write landmark data to tps file | writeland.tps |
