Package: corHMM 2.10

Jeremy Beaulieu

corHMM: Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

Authors:Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut]

corHMM_2.10.tar.gz
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corHMM_2.10.tgz(r-4.5-any)corHMM_2.10.tgz(r-4.4-any)corHMM_2.10.tgz(r-4.3-any)
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corHMM.pdf |corHMM.html✨
corHMM/json (API)

# Install 'corHMM' in R:
install.packages('corHMM', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thej022214/corhmm/issues

Datasets:

On CRAN:

Conda:

8.52 score 13 stars 2 packages 422 scripts 746 downloads 20 mentions 24 exports 63 dependencies

Last updated 2 hours agofrom:f0d1702d01. Checks:1 ERROR, 8 WARNING. Indexed: no.

TargetResultLatest binary
Doc / VignettesFAILApr 03 2025
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R-4.4-macWARNINGApr 03 2025
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Exports:ancRECONancRECON_sliceComputeCIConvertPhangornReconstructionscorDISCcorHMMcorHMMDredgecorHMMDredgeBasedev.raydiscdropStateMatParsequateStateMatParsfitCorrelationTestget_batch_profile_likgetFullMatgetModelTablegetRateCatMatgetStateMat4DatkFoldCrossValidationmakeSimmapplot_batch_profile_likplotMKmodelplotRECONrayDISCsimMarkov

Dependencies:apebackportscheckmatecliclusterGenerationcodacodetoolscolorspacecombinatcorpcorcpp11DEoptimdigestdoParallelexpmfansifarverforeachgenericsGenSAggplot2gluegmpgridExtragtableigraphisobanditeratorslabelinglatticelhslifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellnlmenloptrnnetnumDerivoptimParallelphangornphytoolspillarpkgconfigquadprogR6RColorBrewerRcppRcppArmadillorlangRmpfrscalesscatterplot3dtibbleutf8vctrsviridisviridisLitewithr