Package: corHMM 2.10

Jeremy Beaulieu

corHMM: Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

Authors:Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut]

corHMM_2.10.tar.gz
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corHMM_2.10.tgz(r-4.4-any)corHMM_2.10.tgz(r-4.3-any)
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corHMM_2.10.tgz(r-4.4-emscripten)corHMM_2.10.tgz(r-4.3-emscripten)
corHMM.pdf |corHMM.html✨
corHMM/json (API)

# Install 'corHMM' in R:
install.packages('corHMM', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/thej022214/corhmm/issues

Datasets:

On CRAN:

9.65 score 11 stars 2 packages 426 scripts 652 downloads 20 mentions 24 exports 61 dependencies

Last updated 17 days agofrom:c9d2df0e9e. Checks:OK: 1 ERROR: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 03 2024
R-4.5-winERRORDec 03 2024
R-4.5-linuxERRORDec 03 2024
R-4.4-winERRORDec 03 2024
R-4.4-macERRORDec 03 2024
R-4.3-winERRORDec 03 2024
R-4.3-macERRORDec 03 2024

Exports:ancRECONancRECON_sliceComputeCIConvertPhangornReconstructionscorDISCcorHMMcorHMMDredgecorHMMDredgeBasedev.raydiscdropStateMatParsequateStateMatParsfitCorrelationTestget_batch_profile_likgetFullMatgetModelTablegetRateCatMatgetStateMat4DatkFoldCrossValidationmakeSimmapplot_batch_profile_likplotMKmodelplotRECONrayDISCsimMarkov

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcorpcorcpp11DEoptimdigestdoParallelexpmfansifarverforeachgenericsGenSAggplot2gluegmpgridExtragtableigraphisobanditeratorslabelinglatticelhslifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellnlmenloptrnnetnumDerivoptimParallelphangornphytoolspillarpkgconfigquadprogR6RColorBrewerRcppRcppArmadillorlangRmpfrscalesscatterplot3dtibbleutf8vctrsviridisviridisLitewithr

corHMM Dredge: Automatic model discovery

James D. Boyko

Rendered fromcorHMMDredge.Rmdusingknitr::rmarkdownon Dec 03 2024.

Last update: 2024-11-15
Started: 2024-11-15

corHMM 2.1: Generalized hidden Markov models

James D. Boyko and Jeremy M. Beaulieu

Rendered fromcorHMMv2.1-vignette.Rmdusingknitr::rmarkdownon Dec 03 2024.

Last update: 2024-08-26
Started: 2020-06-15