Package: phylocomr 0.3.4
Luna Luisa Sanchez Reyes
phylocomr: Interface to 'Phylocom'
Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.
Authors:
phylocomr_0.3.4.tar.gz
phylocomr_0.3.4.zip(r-4.7)phylocomr_0.3.4.zip(r-4.6)phylocomr_0.3.4.zip(r-4.5)
phylocomr_0.3.4.tgz(r-4.6-x86_64)phylocomr_0.3.4.tgz(r-4.6-arm64)phylocomr_0.3.4.tgz(r-4.5-x86_64)phylocomr_0.3.4.tgz(r-4.5-arm64)
phylocomr_0.3.4.tar.gz(r-4.7-arm64)phylocomr_0.3.4.tar.gz(r-4.7-x86_64)phylocomr_0.3.4.tar.gz(r-4.6-arm64)phylocomr_0.3.4.tar.gz(r-4.6-x86_64)
phylocomr_0.3.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phylocomr/json (API)
NEWS
| # Install 'phylocomr' in R: |
| install.packages('phylocomr', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/phylocomr/issues
Pkgdown/docs site:https://docs.ropensci.org
phylogenyphylocomphylodiversitycommunity structurecharacter evolutionspeciescommunity-ecologyecologyevolution
Last updated from:a1937fabaa. Checks:13 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 121 | ||
| linux-devel-x86_64 | OK | 106 | ||
| source / vignettes | OK | 213 | ||
| linux-release-arm64 | OK | 111 | ||
| linux-release-x86_64 | OK | 129 | ||
| macos-release-arm64 | OK | 117 | ||
| macos-release-x86_64 | OK | 231 | ||
| macos-oldrel-arm64 | OK | 85 | ||
| macos-oldrel-x86_64 | OK | 257 | ||
| windows-devel | OK | 114 | ||
| windows-release | OK | 93 | ||
| windows-oldrel | OK | 93 | ||
| wasm-release | OK | 115 |
Exports:ecovolveph_aotph_bladjph_comdistph_comdistntph_comstructph_comtraitph_ecovolveph_pdph_phylomaticph_raophylocomphylomatic
Dependencies:cligluelifecyclemagrittrpillarpkgconfigrlangsystibbleutf8vctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Phylocom interface | phylocomr-package phylocomr |
| Executables | ecovolve executables phylocom phylomatic |
| aot | ph_aot |
| bladj | ph_bladj |
| comdist | ph_comdist ph_comdistnt |
| comstruct | ph_comstruct |
| comtrait | ph_comtrait |
| ecovolve | ph_ecovolve |
| pd - Faith's index of phylogenetic diversity | ph_pd |
| phylomatic | ph_phylomatic |
| rao - Rao's quadratic entropy | ph_rao |
| Expected inputs | phylocomr-inputs |
