Package: CALANGO 1.0.20

Felipe Campelo

CALANGO: Comparative Analysis with Annotation-Based Genomic Components

A first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples, and <doi:10.1016/j.patter.2023.100728> for the full paper.

Authors:Francisco Lobo [aut], Felipe Campelo [aut, cre], Jorge Augusto Hongo [aut], Giovanni Marques de Castro [aut], Gabriel Almeida [sad, dnc]

CALANGO_1.0.20.tar.gz
CALANGO_1.0.20.zip(r-4.7)CALANGO_1.0.20.zip(r-4.6)CALANGO_1.0.20.zip(r-4.5)
CALANGO_1.0.20.tgz(r-4.6-any)CALANGO_1.0.20.tgz(r-4.5-any)
CALANGO_1.0.20.tar.gz(r-4.7-any)CALANGO_1.0.20.tar.gz(r-4.6-any)
CALANGO_1.0.20.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CALANGO/json (API)
NEWS

# Install 'CALANGO' in R:
install.packages('CALANGO', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fcampelo/calango/issues

Pkgdown/docs site:https://labpackages.github.io

On CRAN:

Conda:

3.00 score 4 scripts 264 downloads 5 exports 109 dependencies

Last updated from:a1d14b07c7. Checks:9 OK. Indexed: no.
A new build is currently in progress.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK189
source / vignettesOK280
linux-release-x86_64OK165
macos-release-arm64OK121
macos-oldrel-arm64OK92
windows-develOK199
windows-releaseOK107
windows-oldrelOK120
wasm-releaseOK158

Exports:install_bioc_dependenciesmake_reportretrieve_calanguize_genomesretrieve_data_filesrun_CALANGO

Dependencies:apeaskpassassertthatbase64encBiocManagerbriobslibcacachemcallrcliclustercodetoolscolorspacecpp11crosstalkcurldata.tabledendextenddescdigestdownlitdplyrDTeggevaluatefansifarverfastmapfontawesomeforeachfsgclusgenericsggplot2gluegridExtragtableheatmaplyhighrhtmltoolshtmlwidgetshttrhttr2isobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimenlmeopensslotelpbmcapplypermutepillarpkgconfigpkgdownplotlyplyrprocessxpromisespspurrrqapR6raggrappdirsRColorBrewerRcppregistryreshape2rlangrmarkdownS7sassscalesseriationstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttinytexTSPutf8vctrsveganviridisviridisLitewebshotwhiskerwithrxfunxml2yaml

CALANGO Parameters

Rendered fromCALANGO_Parameters.Rmdusingknitr::rmarkdownon May 06 2026.

Last update: 2021-08-26
Started: 2021-02-20