Package: rncl 0.8.10

Francois Michonneau

rncl: An Interface to the Nexus Class Library

An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.

Authors:Francois Michonneau [aut, cre], Ben Bolker [aut], Mark Holder [aut], Paul Lewis [aut], Brian O'Meara [aut]

rncl_0.8.10.tar.gz
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rncl_0.8.10.tgz(r-4.6-x86_64)rncl_0.8.10.tgz(r-4.6-arm64)rncl_0.8.10.tgz(r-4.5-x86_64)rncl_0.8.10.tgz(r-4.5-arm64)
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rncl_0.8.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rncl/json (API)

# Install 'rncl' in R:
install.packages('rncl', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmichonneau/rncl/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

newicknexusphylogeneticstree-parsingcpp

8.86 score 9 stars 37 packages 46 scripts 10k downloads 5 mentions 4 exports 12 dependencies

Last updated from:e06746ef82. Checks:15 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK170
linux-devel-x86_64OK210
source / vignettesOK182
linux-release-arm64OK166
linux-release-x86_64OK191
macos-release-arm64OK113
macos-release-x86_64OK258
macos-oldrel-arm64OK140
macos-oldrel-x86_64OK243
windows-devel-arm64OK291
windows-devel-x86_64OK236
windows-release-arm64OK266
windows-release-x86_64OK179
windows-oldrel-x86_64OK187
wasm-releaseOK140

Exports:make_phyloread_newick_phyloread_nexus_phylorncl

Dependencies:clicrayongluehmslifecyclepkgconfigprettyunitsprogressR6Rcpprlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Read phylogenetic trees from filesmake_phylo read_newick_phylo read_nexus_phylo
rncl: An R interface to the NEXUS Class Libraryrncl-package rncl