Package: rncl 0.8.9

Francois Michonneau

rncl: An Interface to the Nexus Class Library

An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.

Authors:Francois Michonneau [aut, cre], Ben Bolker [aut], Mark Holder [aut], Paul Lewis [aut], Brian O'Meara [aut]

rncl_0.8.9.tar.gz
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rncl_0.8.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
rncl/json (API)

# Install 'rncl' in R:
install.packages('rncl', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmichonneau/rncl/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

newicknexusphylogeneticstree-parsingcpp

8.47 score 9 stars 34 packages 25 scripts 13k downloads 5 mentions 4 exports 12 dependencies

Last updated from:ab96c87dec. Checks:13 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK199
linux-devel-x86_64OK263
source / vignettesOK284
linux-release-arm64OK200
linux-release-x86_64OK208
macos-release-arm64OK142
macos-release-x86_64OK320
macos-oldrel-arm64OK118
macos-oldrel-x86_64OK414
windows-develOK216
windows-releaseOK181
windows-oldrelOK264
wasm-releaseOK206

Exports:make_phyloread_newick_phyloread_nexus_phylorncl

Dependencies:clicrayongluehmslifecyclepkgconfigprettyunitsprogressR6Rcpprlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Read phylogenetic trees from filesmake_phylo read_newick_phylo read_nexus_phylo
rncl: An R interface to the NEXUS Class Libraryrncl-package rncl