Package: rncl 0.8.9

Francois Michonneau

rncl: An Interface to the Nexus Class Library

An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.

Authors:Francois Michonneau [aut, cre], Ben Bolker [aut], Mark Holder [aut], Paul Lewis [aut], Brian O'Meara [aut]

rncl_0.8.9.tar.gz
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rncl_0.8.9.tgz(r-4.6-x86_64)rncl_0.8.9.tgz(r-4.6-arm64)rncl_0.8.9.tgz(r-4.5-x86_64)rncl_0.8.9.tgz(r-4.5-arm64)
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rncl_0.8.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
rncl/json (API)
NEWS

# Install 'rncl' in R:
install.packages('rncl', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmichonneau/rncl/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

newicknexusphylogeneticstree-parsingcpp

8.43 score 9 stars 33 packages 24 scripts 13k downloads 5 mentions 4 exports 12 dependencies

Last updated from:ab96c87dec. Checks:13 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK179
linux-devel-x86_64OK175
source / vignettesOK210
linux-release-arm64OK184
linux-release-x86_64OK154
macos-release-arm64OK139
macos-release-x86_64OK343
macos-oldrel-arm64OK179
macos-oldrel-x86_64OK357
windows-develOK197
windows-releaseOK195
windows-oldrelOK173
wasm-releaseOK152

Exports:make_phyloread_newick_phyloread_nexus_phylorncl

Dependencies:clicrayongluehmslifecyclepkgconfigprettyunitsprogressR6Rcpprlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Read phylogenetic trees from filesmake_phylo read_newick_phylo read_nexus_phylo
rncl: An R interface to the NEXUS Class Libraryrncl-package rncl