{
  "_id": "6ad34f4ade48616761a36b94",
  "Package": "rncl",
  "Title": "An Interface to the Nexus Class Library",
  "Version": "0.8.10",
  "Authors@R": "c(person(\"Francois\", \"Michonneau\", role=c(\"aut\", \"cre\"),\nemail=\"francois.michonneau@gmail.com\",    comment = c(\"ORCID\" = \"0000-0002-9092-966X\")),\nperson(\"Ben\", \"Bolker\", role=c(\"aut\"),    comment = c(\"ORCID\" = \"0000-0002-2127-0443\")),\nperson(\"Mark\", \"Holder\", role=c(\"aut\"),   comment = c(\"ORCID\" = \"0000-0001-5575-0536\")),\nperson(\"Paul\", \"Lewis\", role=c(\"aut\"),    comment = c(\"ORCID\" = \"0000-0001-9852-8759\")),\nperson(\"Brian\", \"O'Meara\", role=c(\"aut\"), comment = c(\"ORCID\" = \"0000-0002-0337-5997\")))",
  "Maintainer": "Francois Michonneau <francois.michonneau@gmail.com>",
  "Description": "An interface to the Nexus Class Library which allows\nparsing of NEXUS, Newick and other phylogenetic tree file\nformats. It provides elements of the file that can be used to\nbuild phylogenetic objects such as ape's 'phylo' or phylobase's\n'phylo4(d)'. This functionality is demonstrated with\n'read_newick_phylo()' and 'read_nexus_phylo()'.",
  "License": "BSD_2_clause + file LICENSE",
  "URL": "https://github.com/fmichonneau/rncl",
  "BugReports": "https://github.com/fmichonneau/rncl/issues",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Repository": "https://phylotastic.r-universe.dev",
  "Date/Publication": "2026-07-31 14:31:30 UTC",
  "RemoteUrl": "https://github.com/fmichonneau/rncl",
  "RemoteRef": "HEAD",
  "RemoteSha": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-17 10:24:10 UTC",
    "User": "root"
  },
  "Author": "Francois Michonneau [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9092-966X>),\nBen Bolker [aut] (ORCID: <https://orcid.org/0000-0002-2127-0443>),\nMark Holder [aut] (ORCID: <https://orcid.org/0000-0001-5575-0536>),\nPaul Lewis [aut] (ORCID: <https://orcid.org/0000-0001-9852-8759>),\nBrian O'Meara [aut] (ORCID: <https://orcid.org/0000-0002-0337-5997>)",
  "_user": "phylotastic",
  "_type": "src",
  "_file": "rncl_0.8.10.tar.gz",
  "_fileid": "https://r2.ropensci.org/13846dd08ec9d484ab6419fef0b24d0c76b4fc0573ca81bfc4a62a09b14d12f8",
  "_filesize": 359494,
  "_sha256": "13846dd08ec9d484ab6419fef0b24d0c76b4fc0573ca81bfc4a62a09b14d12f8",
  "_expires": "2027-01-25T10:34:48.000Z",
  "_created": "2026-10-17T10:24:10.000Z",
  "_published": "2026-10-17T10:34:50.057Z",
  "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117373627936,
      "time": 170,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12098116556"
    },
    {
      "job": 117373627925,
      "time": 210,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12098282025"
    },
    {
      "job": 117373627946,
      "time": 166,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098311658"
    },
    {
      "job": 117373627863,
      "time": 191,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098157402"
    },
    {
      "job": 117373627881,
      "time": 140,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12098386928"
    },
    {
      "job": 117373627956,
      "time": 243,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12098157973"
    },
    {
      "job": 117373627930,
      "time": 113,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098640358"
    },
    {
      "job": 117373627967,
      "time": 258,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098272618"
    },
    {
      "job": 117373070991,
      "time": 182,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12097762225"
    },
    {
      "job": 117373627827,
      "time": 140,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12098276950"
    },
    {
      "job": 117373628015,
      "time": 291,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12097664802"
    },
    {
      "job": 117373627902,
      "time": 236,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12098670511"
    },
    {
      "job": 117373627932,
      "time": 187,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12098232144"
    },
    {
      "job": 117373627885,
      "time": 266,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098018127"
    },
    {
      "job": 117373627989,
      "time": 179,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12098197144"
    }
  ],
  "_upstream": "https://github.com/fmichonneau/rncl",
  "_commit": {
    "id": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
    "author": "François Michonneau <francois.michonneau@gmail.com>",
    "committer": "François Michonneau <francois.michonneau@gmail.com>",
    "message": "update URL\n",
    "time": 1785508290
  },
  "_maintainer": {
    "name": "Francois Michonneau",
    "email": "francois.michonneau@gmail.com",
    "login": "fmichonneau",
    "mastodon": "@fmic_@hachyderm.io",
    "bluesky": "@francoismichonneau.net",
    "orcid": "0000-0002-9092-966X",
    "description": "Solutions Engineer @posit-dev ",
    "uuid": 5502922
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.1",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "progress",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.11.0",
      "role": "Imports"
    },
    {
      "package": "progress",
      "version": ">= 1.1.2",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "ape",
      "role": "Suggests"
    }
  ],
  "_owner": "fmichonneau",
  "_selfowned": false,
  "_usedby": 37,
  "_updates": [
    {
      "week": "2025-50",
      "n": 5
    },
    {
      "week": "2026-04",
      "n": 3
    },
    {
      "week": "2026-31",
      "n": 5
    }
  ],
  "_tags": [
    {
      "name": "v0.8.8",
      "date": "2025-12-08"
    },
    {
      "name": "v0.8.9",
      "date": "2026-01-20"
    }
  ],
  "_topics": [
    "newick",
    "nexus",
    "phylogenetics",
    "tree-parsing",
    "cpp"
  ],
  "_stars": 9,
  "_contributors": [
    {
      "user": "fmichonneau",
      "count": 205,
      "uuid": 5502922
    },
    {
      "user": "eddelbuettel",
      "count": 3,
      "uuid": 673121
    },
    {
      "user": "dwinter",
      "count": 1,
      "uuid": 103573
    }
  ],
  "_userbio": {
    "uuid": 1652822,
    "type": "organization",
    "name": "phylotastic",
    "followers": 5
  },
  "_downloads": {
    "count": 10430,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rncl"
  },
  "_mentions": 5,
  "_devurl": "https://github.com/fmichonneau/rncl",
  "_searchresults": 46,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rncl.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/fmichonneau/rncl",
  "_realowner": "fmichonneau",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.0",
      "date": "2014-12-02"
    },
    {
      "version": "0.2.2",
      "date": "2015-02-06"
    },
    {
      "version": "0.4.0",
      "date": "2015-07-09"
    },
    {
      "version": "0.6.0",
      "date": "2015-07-22"
    },
    {
      "version": "0.8.2",
      "date": "2016-12-16"
    },
    {
      "version": "0.8.3",
      "date": "2018-07-27"
    },
    {
      "version": "0.8.4",
      "date": "2020-02-10"
    },
    {
      "version": "0.8.6",
      "date": "2022-03-18"
    },
    {
      "version": "0.8.7",
      "date": "2023-01-08"
    },
    {
      "version": "0.8.8",
      "date": "2025-12-11"
    },
    {
      "version": "0.8.9",
      "date": "2026-01-21"
    },
    {
      "version": "0.8.10",
      "date": "2026-08-04"
    }
  ],
  "_exports": [
    "make_phylo",
    "read_newick_phylo",
    "read_nexus_phylo",
    "rncl"
  ],
  "_help": [
    {
      "page": "read_nexus_phylo",
      "title": "Read phylogenetic trees from files",
      "topics": [
        "make_phylo",
        "read_newick_phylo",
        "read_nexus_phylo"
      ]
    },
    {
      "page": "rncl",
      "title": "rncl: An R interface to the NEXUS Class Library",
      "topics": [
        "rncl-package",
        "rncl"
      ]
    }
  ],
  "_readme": "https://github.com/fmichonneau/rncl/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "crayon",
    "glue",
    "hms",
    "lifecycle",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "Rcpp",
    "rlang",
    "vctrs"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 8.856698887389769,
  "_indexed": false,
  "_nocasepkg": "rncl",
  "_universes": [
    "phylotastic"
  ],
  "_indexurl": "https://fmichonneau.r-universe.dev/rncl",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:45.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/31d13d611d5c74bcbbf85fe7b5e7bcc038e88d8cc86f3a8b57600eff27942ef5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.8.10",
      "date": "2026-10-17T10:27:17.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/4858c33ffb3c9f6da76033f740fb435081d997b8792a6726fe0a88e6dac22258",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:47.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/b5f384aabaad5159ed2c87dcda70a70118d4d5dda8673aaed282f9042d2e2846",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:55.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/b16eccbf86d4f42ba3eb7d4fb377f782697510c2aa78367b0c854c313697c82d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.8.10",
      "date": "2026-10-17T10:31:39.000Z",
      "arch": "aarch64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/37a36e85b56949e2556a4aa98c0059fb4ae878e4129efccc9173f9918fe10afe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.8.10",
      "date": "2026-10-17T10:31:34.000Z",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/78132141f9a48fa1766dffe3bc42f8c8ddd1667bbc26ede02609a34654ff79e6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.8.10",
      "date": "2026-10-17T10:31:07.000Z",
      "arch": "aarch64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/d9d5c1742e1e54dc6e3a49eadce47d39a83dba0e710047a0b185eccd08061a51",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.8.10",
      "date": "2026-10-17T10:32:28.000Z",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/cfca8d67981fb4d417379fa6df7a46222d6839e6517873332e71a27c8e50b6a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:35.000Z",
      "arch": "emscripten",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/88b2d7673a8110389ece2beb5585c29f27fb2905a6ddf484e4f49bef43adf1b5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.8.10",
      "date": "2026-10-17T10:28:20.000Z",
      "arch": "aarch64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/ae0539a8f7f53ec76032f9e026c5fd85e5735056ae58fbdee7cdc3abb506d5d2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:02.000Z",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/c6c29be3f4a7039459746a2c30ccbc27f5638984d162b7f41330b9d2cb6bbd23",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:02.000Z",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/fafb2bfd361b4b929406fd43f9cc843b7d845cffe6ec6ad7bcf7893c0a3b07f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.8.10",
      "date": "2026-10-17T10:27:41.000Z",
      "arch": "aarch64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/c209cf9d1de1edb3a8354ff614ee541debe0452f6a609adbe8bc621d5bd0dc79",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.8.10",
      "date": "2026-10-17T10:26:01.000Z",
      "arch": "x86_64",
      "commit": "e06746ef82f58018f3f478d671a23ddd6bfe6252",
      "fileid": "https://r2.ropensci.org/7b58d90fbc0b492f91fff8e39434419cfda04e01695f34028d51c6c5eb6e0b61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/39024603930"
    }
  ]
}