Package: treedater 0.5.3

Erik Volz

treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.

Authors:Erik Volz [aut, cre]

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Peer review:

Bug tracker:https://github.com/emvolz/treedater/issues

On CRAN:

10 exports 23 stars 3.56 score 9 dependencies 16 mentions 59 scripts 179 downloads

Last updated 2 years agofrom:7b8a72aa0e. Checks:OK: 1 WARNING: 6. Indexed: no.

Exports:bootdatergibbs_jittergoodnessOfFitPlotoutlierLineagesoutlierTipsparbootrelaxedClockTestrootToTipRegressionPlotsampleYearsFromLabels

Dependencies:apedigestlatticelimSolvelpSolveMASSnlmequadprogRcpp