Package: treedater 0.5.3
Erik Volz
treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.
Authors:
treedater_0.5.3.tar.gz
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treedater.pdf |treedater.html✨
treedater/json (API)
| # Install 'treedater' in R: |
| install.packages('treedater', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/emvolz/treedater/issues
Last updated 3 years agofrom:7b8a72aa0e. Checks:OK: 1 WARNING: 6. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 11 2024 |
| R-4.5-win | WARNING | Dec 11 2024 |
| R-4.5-linux | WARNING | Dec 11 2024 |
| R-4.4-win | WARNING | Dec 11 2024 |
| R-4.4-mac | WARNING | Dec 11 2024 |
| R-4.3-win | WARNING | Dec 11 2024 |
| R-4.3-mac | WARNING | Dec 11 2024 |
Exports:bootdatergibbs_jittergoodnessOfFitPlotoutlierLineagesoutlierTipsparbootrelaxedClockTestrootToTipRegressionPlotsampleYearsFromLabels
Dependencies:apedigestlatticelimSolvelpSolveMASSnlmequadprogRcpp
