Package: treedater 1.0.2

Erik Volz

treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.

Authors:Erik Volz [aut, cre]

treedater_1.0.2.tar.gz
treedater_1.0.2.zip(r-4.7)treedater_1.0.2.zip(r-4.6)treedater_1.0.2.zip(r-4.5)
treedater_1.0.2.tgz(r-4.6-any)treedater_1.0.2.tgz(r-4.5-any)
treedater_1.0.2.tar.gz(r-4.7-any)treedater_1.0.2.tar.gz(r-4.6-any)
treedater_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
treedater/json (API)

# Install 'treedater' in R:
install.packages('treedater', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/emvolz/treedater/issues

On CRAN:

Conda:

7.46 score 27 stars 71 scripts 215 downloads 16 mentions 10 exports 9 dependencies

Last updated from:0095be7e9b. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK127
source / vignettesOK352
linux-release-x86_64OK120
macos-release-arm64OK89
macos-oldrel-arm64OK92
windows-develOK89
windows-releaseOK86
windows-oldrelOK75
wasm-releaseOK97

Exports:bootdatergibbs_jittergoodnessOfFitPlotoutlierLineagesoutlierTipsparbootrelaxedClockTestrootToTipRegressionPlotsampleYearsFromLabels

Dependencies:apedigestlatticelimSolvelpSolveMASSnlmequadprogRcpp

Molecular Clock Dating of Influenza H3N2

Erik Volz

Rendered fromh3n2.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2025-09-01
Started: 2018-04-24