Package: RateViz 1.0

Brian C. OMeara

RateViz: Visualizations for instantaneous rate matrices

This package uses an instantaneous rate matrix (such as is used for models of DNA evolution, morphological character change over evolutionary history, and other areas) and summarizes it in various ways. These could include bubble plots, a network showing transitions, or calculations to figure out likely paths between two states.

Authors:Brian C. O'Meara and Jeremy M. Beaulieu

RateViz_1.0.tar.gz
RateViz_1.0.zip(r-4.5)RateViz_1.0.zip(r-4.4)RateViz_1.0.zip(r-4.3)
RateViz_1.0.tgz(r-4.5-any)RateViz_1.0.tgz(r-4.4-any)RateViz_1.0.tgz(r-4.3-any)
RateViz_1.0.tar.gz(r-4.5-noble)RateViz_1.0.tar.gz(r-4.4-noble)
RateViz_1.0.tgz(r-4.4-emscripten)RateViz_1.0.tgz(r-4.3-emscripten)
RateViz.pdf |RateViz.html✨
RateViz/json (API)

# Install 'RateViz' in R:
install.packages('RateViz', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bomeara/rateviz/issues

On CRAN:

Conda:

1.00 score 6 scripts 3 exports 14 dependencies

Last updated 8 years agofrom:8719398f0a. Checks:1 OK, 7 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 21 2025
R-4.5-winNOTEFeb 21 2025
R-4.5-macNOTEFeb 21 2025
R-4.5-linuxNOTEFeb 21 2025
R-4.4-winNOTEFeb 21 2025
R-4.4-macNOTEFeb 21 2025
R-4.3-winNOTEFeb 21 2025
R-4.3-macNOTEFeb 21 2025

Exports:ComputePathwayProbabilityPlotBubbleMatrixPlotTransitionNetwork

Dependencies:clicpp11digestexpmglueigraphlatticelifecyclemagrittrMatrixmiscToolspkgconfigrlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Visualizations for instantaneous rate matricesRateViz-package RateViz
ComputePathwayProbabilityComputePathwayProbability
PlotBubbleMatrixPlotBubbleMatrix
PlotTransitionNetworkPlotTransitionNetwork