Package: RateViz 1.0
Brian C. OMeara
RateViz: Visualizations for instantaneous rate matrices
This package uses an instantaneous rate matrix (such as is used for models of DNA evolution, morphological character change over evolutionary history, and other areas) and summarizes it in various ways. These could include bubble plots, a network showing transitions, or calculations to figure out likely paths between two states.
Authors:
RateViz_1.0.tar.gz
RateViz_1.0.zip(r-4.5)RateViz_1.0.zip(r-4.4)RateViz_1.0.zip(r-4.3)
RateViz_1.0.tgz(r-4.4-any)RateViz_1.0.tgz(r-4.3-any)
RateViz_1.0.tar.gz(r-4.5-noble)RateViz_1.0.tar.gz(r-4.4-noble)
RateViz_1.0.tgz(r-4.4-emscripten)RateViz_1.0.tgz(r-4.3-emscripten)
RateViz.pdf |RateViz.html✨
RateViz/json (API)
| # Install 'RateViz' in R: |
| install.packages('RateViz', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bomeara/rateviz/issues
Last updated 7 years agofrom:8719398f0a. Checks:OK: 1 NOTE: 6. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 24 2024 |
| R-4.5-win | NOTE | Oct 24 2024 |
| R-4.5-linux | NOTE | Oct 24 2024 |
| R-4.4-win | NOTE | Oct 24 2024 |
| R-4.4-mac | NOTE | Oct 24 2024 |
| R-4.3-win | NOTE | Oct 24 2024 |
| R-4.3-mac | NOTE | Oct 24 2024 |
Exports:ComputePathwayProbabilityPlotBubbleMatrixPlotTransitionNetwork
Dependencies:clicpp11digestexpmglueigraphlatticelifecyclemagrittrMatrixmiscToolspkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Visualizations for instantaneous rate matrices | RateViz-package RateViz |
| ComputePathwayProbability | ComputePathwayProbability |
| PlotBubbleMatrix | PlotBubbleMatrix |
| PlotTransitionNetwork | PlotTransitionNetwork |
