Package: closesamples 1.0

Brian C. OMeara

closesamples: Gets feasible taxon samples on a tree

Often you want to pick species at random, but don't have access to all the possible species, and your group might be a nonrandom set. However, you might have a taxonomy, perhaps a bad one, for all the species. This will let you pick species at random on that full taxonomy and then pick a species out of the possible set closest to this. You could still have a biased sample, but way less biased.

Authors:Brian C. O'Meara

closesamples_1.0.tar.gz
closesamples_1.0.zip(r-4.5)closesamples_1.0.zip(r-4.4)closesamples_1.0.zip(r-4.3)
closesamples_1.0.tgz(r-4.5-any)closesamples_1.0.tgz(r-4.4-any)closesamples_1.0.tgz(r-4.3-any)
closesamples_1.0.tar.gz(r-4.5-noble)closesamples_1.0.tar.gz(r-4.4-noble)
closesamples_1.0.tgz(r-4.4-emscripten)closesamples_1.0.tgz(r-4.3-emscripten)
closesamples.pdf |closesamples.html
closesamples/json (API)

# Install 'closesamples' in R:
install.packages('closesamples', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bomeara/closesamples/issues

On CRAN:

Conda:

1.70 score 4 exports 123 dependencies

Last updated 3 years agofrom:1beb4a721e. Checks:1 OK, 7 ERROR. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 16 2025
R-4.5-winERRORFeb 16 2025
R-4.5-macERRORFeb 16 2025
R-4.5-linuxERRORFeb 16 2025
R-4.4-winERRORFeb 16 2025
R-4.4-macERRORFeb 16 2025
R-4.3-winERRORFeb 16 2025
R-4.3-macERRORFeb 16 2025

Exports:GetClosestSamplesGetEnclosingTaxonomyLabelNodesWithFeasibleDescendantsSubsampleTree

Dependencies:apeaskpassassertthatbackportsbase64encbitbit64bslibcachemcheckmateclicliprclustercolorspacecpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratreadrrentrezrexRfastRfast2ritisrlangrmarkdownRnanoflannrnclrotlrpartrredlistrstudioapisassscalessolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo