Package: closesamples 1.0

Brian C. OMeara

closesamples: Gets feasible taxon samples on a tree

Often you want to pick species at random, but don't have access to all the possible species, and your group might be a nonrandom set. However, you might have a taxonomy, perhaps a bad one, for all the species. This will let you pick species at random on that full taxonomy and then pick a species out of the possible set closest to this. You could still have a biased sample, but way less biased.

Authors:Brian C. O'Meara

closesamples_1.0.tar.gz
closesamples_1.0.zip(r-4.5)closesamples_1.0.zip(r-4.4)closesamples_1.0.zip(r-4.3)
closesamples_1.0.tgz(r-4.4-any)closesamples_1.0.tgz(r-4.3-any)
closesamples_1.0.tar.gz(r-4.5-noble)closesamples_1.0.tar.gz(r-4.4-noble)
closesamples_1.0.tgz(r-4.4-emscripten)closesamples_1.0.tgz(r-4.3-emscripten)
closesamples.pdf |closesamples.html✨
closesamples/json (API)

# Install 'closesamples' in R:
install.packages('closesamples', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bomeara/closesamples/issues

Datasets:

    On CRAN:

    1.70 score 4 exports 127 dependencies

    Last updated 3 years agofrom:1beb4a721e. Checks:OK: 1 ERROR: 6. Indexed: no.

    TargetResultDate
    Doc / VignettesOKNov 16 2024
    R-4.5-winERRORAug 18 2024
    R-4.5-linuxERRORNov 18 2024
    R-4.4-macERRORNov 18 2024
    R-4.4-winERRORAug 18 2024
    R-4.3-winERRORAug 18 2024
    R-4.3-macERRORNov 18 2024

    Exports:GetClosestSamplesGetEnclosingTaxonomyLabelNodesWithFeasibleDescendantsSubsampleTree

    Dependencies:apeaskpassassertthatbackportsbase64encbitbit64boldbslibcachemcheckmateclicliprclustercodetoolscolorspacecpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratreadrrentrezrexRfastRfast2ritisrlangrmarkdownRnanoflannrnclrotlrpartrredlistrstudioapisassscalessolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo