Package: closesamples 1.0

Brian C. OMeara

closesamples: Gets feasible taxon samples on a tree

Often you want to pick species at random, but don't have access to all the possible species, and your group might be a nonrandom set. However, you might have a taxonomy, perhaps a bad one, for all the species. This will let you pick species at random on that full taxonomy and then pick a species out of the possible set closest to this. You could still have a biased sample, but way less biased.

Authors:Brian C. O'Meara

closesamples_1.0.tar.gz
closesamples_1.0.zip(r-4.7)closesamples_1.0.zip(r-4.6)closesamples_1.0.zip(r-4.5)
closesamples_1.0.tgz(r-4.6-any)closesamples_1.0.tgz(r-4.5-any)
closesamples_1.0.tar.gz(r-4.7-any)closesamples_1.0.tar.gz(r-4.6-any)
closesamples_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
closesamples/json (API)

# Install 'closesamples' in R:
install.packages('closesamples', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bomeara/closesamples/issues

On CRAN:

Conda:

1.70 score 4 exports 74 dependencies

Last updated from:1beb4a721e. Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR154
source / vignettesOK201
linux-release-x86_64ERROR212
macos-release-arm64ERROR77
macos-oldrel-arm64ERROR98
windows-develERROR120
windows-releaseERROR130
windows-oldrelERROR99
wasm-releaseOK140

Exports:GetClosestSamplesGetEnclosingTaxonomyLabelNodesWithFeasibleDescendantsSubsampleTree

Dependencies:apeaskpassbackportsBHcheckmateclicodetoolscpp11crayoncrulcurldata.tabledigestdplyrfuturefuture.applygenericsglobalsgluehmshttpcodehttrigraphjsonlitelatticelifecyclelistenvmagrittrMatrixmimenatservnlmeopensslosqpparallellyphangornpillarpkgconfigplyrprettyunitsprogressprogressrR6RcppRcppArmadilloRcppParallelrentrezRfastRfast2ritisrlangRnanoflannrnclrotlrredlistS7solriumstringisystaxizetibbletidyselecttriebeardurltoolsutf8vctrsWikipediRwikitaxawithrworrmsXMLxml2ziggzoo