Package: phylolm 2.6.5
phylolm: Phylogenetic Linear Regression
Provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. Other tools include functions to test the adequacy of a population tree.
Authors:
phylolm_2.6.5.tar.gz
phylolm_2.6.5.zip(r-4.5)phylolm_2.6.5.zip(r-4.4)phylolm_2.6.5.zip(r-4.3)
phylolm_2.6.5.tgz(r-4.4-x86_64)phylolm_2.6.5.tgz(r-4.4-arm64)phylolm_2.6.5.tgz(r-4.3-x86_64)phylolm_2.6.5.tgz(r-4.3-arm64)
phylolm_2.6.5.tar.gz(r-4.5-noble)phylolm_2.6.5.tar.gz(r-4.4-noble)
phylolm_2.6.5.tgz(r-4.4-emscripten)phylolm_2.6.5.tgz(r-4.3-emscripten)
phylolm.pdf |phylolm.html✨
phylolm/json (API)
# Install 'phylolm' in R: |
install.packages('phylolm', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lamho86/phylolm/issues
- flowerSize - Flower size of 25 Euphorbiaceae species
- flowerTree - Phylogenetic tree of 25 Euphorbiaceae species
- guidetree - Binary population tree within Arabidopsis thaliana
- quartetCF - Quartet concordance factors across Arabidopsis thaliana
Last updated 10 months agofrom:58b532b63c. Checks:OK: 1 NOTE: 8. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 06 2024 |
R-4.5-win-x86_64 | NOTE | Sep 06 2024 |
R-4.5-linux-x86_64 | NOTE | Sep 06 2024 |
R-4.4-win-x86_64 | NOTE | Sep 06 2024 |
R-4.4-mac-x86_64 | NOTE | Sep 06 2024 |
R-4.4-mac-aarch64 | NOTE | Sep 06 2024 |
R-4.3-win-x86_64 | NOTE | Sep 06 2024 |
R-4.3-mac-x86_64 | NOTE | Sep 06 2024 |
R-4.3-mac-aarch64 | NOTE | Sep 06 2024 |
Exports:AIC.logLik.phyloglmAIC.logLik.phylolmAIC.phyloglmAIC.phylolmconfint.phylolmextractAIC.phylolmlogLik.phyloglmlogLik.phylolmmacemodel.frame.phylolmnobs.phyloglmnobs.phylolmOU1d.loglikOUshiftsphyloglmphyloglmstepphylolmphylostepplot.OUshiftsplot.phyloglmplot.phylolmpredict.phylolmprint.logLik.phyloglmprint.logLik.phylolmprint.phyloglmprint.phylolmprint.summary.phyloglmprint.summary.phylolmpruningwise.branching.timespruningwise.distFromRootrbinTraitresiduals.phyloglmresiduals.phylolmrTraitstepwise.test.treesummary.phyloglmsummary.phylolmtest.one.species.treetest.tree.preparationthree.point.computetransf.branch.lengthsvcov.phyloglmvcov.phylolm
Dependencies:apecodetoolsdigestfuturefuture.applyglobalslatticelistenvnlmeparallellyRcpp