Package: laser 2.4-1

Dan Rabosky

laser: Likelihood Analysis of Speciation/Extinction Rates from Phylogenies

laser implements maximum likelihood methods based on the birth-death process to test whether diversification rates have changed over time and whether rates vary among lineages.

Authors:Dan Rabosky, Klaus Schliep

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laser.pdf |laser.html✨
laser/json (API)
NEWS

# Install 'laser' in R:
install.packages('laser', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • agamids - Ultrametric Phylogeny of Australian Agamid Lizards
  • plethodon - Plethodon
  • rtrees5 - Random Phylogenetic Trees
  • rtrees50 - Random Phylogenetic Trees
  • warblers - Branching times from phylogeny of North American Dendroica warblers

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.02 score 2 stars 52 scripts 70 downloads 47 exports 40 dependencies

Last updated 11 years agofrom:d4b5245f08. Checks:OK: 1 ERROR: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-winERRORNov 01 2024
R-4.5-linuxERRORNov 01 2024
R-4.4-winERRORNov 01 2024
R-4.4-macERRORNov 01 2024
R-4.3-winERRORNov 01 2024
R-4.3-macERRORNov 01 2024

Exports:bdbirthdeathSimcalcLHbdcheckbasalcombinationsDDLDDXfitBOTHVARfitdAICrcfitdAICrc.batchfitEXVARfitSPVARgamStatgetBtimesgetBtimes.batchgetLikelihood.BOTHVARgetLikelihood.EXVARgetLikelihood.SPVARgetSpeciationtimesgsrlambda.crown.ms01lambda.stem.cilambda.stem.mllambda.stem.ms01lambdaFxmccrTestmuFxnode.sonsplotLttplotNodeNumbers.phyloplotRatepTt.BOTHVARpTt.EXVARpTt.SPVARpureBirthrhoFxn.BOTHVARrhoFxn.EXVARrhoFxn.SPVARscaleBranchingtimestruncateTreeyule2rateyule3rateyule4rateyule5rateyuleint2yuleSimyuleWindow

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdeSolvedigestdoParallelexpmforeachgeigergenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dsubplexvctrs