Package: laser 2.4-1

Dan Rabosky

laser: Likelihood Analysis of Speciation/Extinction Rates from Phylogenies

laser implements maximum likelihood methods based on the birth-death process to test whether diversification rates have changed over time and whether rates vary among lineages.

Authors:Dan Rabosky, Klaus Schliep

laser_2.4-1.tar.gz
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laser_2.4-1.tgz(r-4.4-any)laser_2.4-1.tgz(r-4.3-any)
laser_2.4-1.tar.gz(r-4.5-noble)laser_2.4-1.tar.gz(r-4.4-noble)
laser_2.4-1.tgz(r-4.4-emscripten)laser_2.4-1.tgz(r-4.3-emscripten)
laser.pdf |laser.html✨
laser/json (API)
NEWS

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

47 exports 2 stars 0.09 score 58 dependencies 52 scripts 54 downloads

Last updated 11 years agofrom:d4b5245f08. Checks:OK: 1 ERROR: 6. Indexed: no.

Exports:bdbirthdeathSimcalcLHbdcheckbasalcombinationsDDLDDXfitBOTHVARfitdAICrcfitdAICrc.batchfitEXVARfitSPVARgamStatgetBtimesgetBtimes.batchgetLikelihood.BOTHVARgetLikelihood.EXVARgetLikelihood.SPVARgetSpeciationtimesgsrlambda.crown.ms01lambda.stem.cilambda.stem.mllambda.stem.ms01lambdaFxmccrTestmuFxnode.sonsplotLttplotNodeNumbers.phyloplotRatepTt.BOTHVARpTt.EXVARpTt.SPVARpureBirthrhoFxn.BOTHVARrhoFxn.EXVARrhoFxn.SPVARscaleBranchingtimestruncateTreeyule2rateyule3rateyule4rateyule5rateyuleint2yuleSimyuleWindow

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdeSolvedigestdoParallelexpmfansifarverfastmatchforeachgeigergenericsggplot2ggseqlogogluegtableigraphisobanditeratorslabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspillarpkgconfigquadprogR6RColorBrewerRcpprlangscalesscatterplot3dsubplextibbleutf8vctrsviridisLitewithr