Package: sensiPhy 0.8.5
sensiPhy: Sensitivity Analysis for Comparative Methods
An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).
Authors:
sensiPhy_0.8.5.tar.gz
sensiPhy_0.8.5.zip(r-4.5)sensiPhy_0.8.5.zip(r-4.4)sensiPhy_0.8.5.zip(r-4.3)
sensiPhy_0.8.5.tgz(r-4.4-any)sensiPhy_0.8.5.tgz(r-4.3-any)
sensiPhy_0.8.5.tar.gz(r-4.5-noble)sensiPhy_0.8.5.tar.gz(r-4.4-noble)
sensiPhy_0.8.5.tgz(r-4.4-emscripten)sensiPhy_0.8.5.tgz(r-4.3-emscripten)
sensiPhy.pdf |sensiPhy.html✨
sensiPhy/json (API)
NEWS
# Install 'sensiPhy' in R: |
install.packages('sensiPhy', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/paternogbc/sensiphy/issues
- alien - Alien Mammals dataset: Example dataset for the package sensiPhy
- alien.data - Alien Mammals dataset: Example dataset for the package sensiPhy
- alien.phy - Alien Mammals dataset: Example dataset for the package sensiPhy
- primates - Primates dataset: Example dataset for the package sensiPhy
- primates.data - Primates dataset: Example dataset for the package sensiPhy
- primates.phy - Primates dataset: Example dataset for the package sensiPhy
comparative-methodsecologyevolutionphylogeneticssensitivity-analysis
Last updated 4 years agofrom:e20b0003f9. Checks:OK: 3 NOTE: 4. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 28 2024 |
R-4.5-win | NOTE | Aug 28 2024 |
R-4.5-linux | NOTE | Aug 28 2024 |
R-4.4-win | NOTE | Aug 28 2024 |
R-4.4-mac | NOTE | Aug 28 2024 |
R-4.3-win | OK | Aug 28 2024 |
R-4.3-mac | OK | Aug 28 2024 |
Exports:clade_continuousclade_discreteclade_phyglmclade_phylmclade_physiginflu_continuousinflu_discreteinflu_phyglminflu_phylminflu_physigintra_clade_phyglmintra_clade_phylmintra_influ_phyglmintra_influ_phylmintra_phyglmintra_phylmintra_physigintra_samp_phyglmintra_samp_phylmmatch_dataphymiss.phylo.dsamp_continuoussamp_discretesamp_phyglmsamp_phylmsamp_physigsensi_plottree_bdtree_clade_phyglmtree_clade_phylmtree_continuoustree_discretetree_influ_phyglmtree_influ_phylmtree_intra_phyglmtree_intra_phylmtree_phyglmtree_phylmtree_physigtree_samp_phyglmtree_samp_phylm
Dependencies:apecapercliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdeSolvedigestdoParallelexpmfansifarverfastmatchforeachfuturefuture.applygeigergenericsggplot2ggseqlogoglobalsgluegtableigraphisobanditeratorslabelinglatticelifecyclelistenvmagrittrmapsMASSMatrixmgcvmnormtmunsellmvtnormncbitnlmenumDerivoptimParallelparallellyphangornphylolmphytoolspillarpkgconfigquadprogR6RColorBrewerRcpprlangscalesscatterplot3dsubplextibbleutf8vctrsviridisLitewithr