Package: selac 1.7.5

Jeremy Beaulieu

selac: Selection Models for Amino Acid and/or Codon Evolution

Sets up and executes a SelAC model (Selection on Amino acids and codons) for testing the presence of selection in amino acid or codon among a set of genes on a fixed phylogeny. Beaulieu et al (2019) <doi:10.1093/molbev/msy222>.

Authors:Jeremy Beaulieu [aut, cre], JJ Chai [aut], Mike Gilchrist [aut], Cedric Landerer [aut], Graham Derryberry [aut], Brian O'Meara [aut]

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Peer review:

Bug tracker:https://github.com/bomeara/selac/issues

On CRAN:

12 exports 0.61 score 52 dependencies 18 scripts 20 downloads

Last updated 3 years agofrom:cfa135e474. Checks:OK: 7. Indexed: no.

Exports:GetAdequateManyRepsGetAdequateSelacGetFunctionalityGetMarginalAllGenesGetPartitionOrderGetSelacSiteLikelihoodsNucSimulatorSelacOptimizeSelacSimulatorSelacSimulatorEvolvingRatesSelonOptimizeSelonSimulator

Dependencies:ade4apeclicolorspacecpp11data.tabledeSolvedigestexpmfansifarverfastmatchgenericsGenSAggplot2ggseqlogogluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmenloptrnnetphangornpillarpixmappkgconfigquadprogR6RColorBrewerRcppRcppArmadillorlangscalessegmentedseqinrspstatmodtibbleutf8vctrsviridisLitewithrzoo