Package: selac 1.7.5
selac: Selection Models for Amino Acid and/or Codon Evolution
Sets up and executes a SelAC model (Selection on Amino acids and codons) for testing the presence of selection in amino acid or codon among a set of genes on a fixed phylogeny. Beaulieu et al (2019) <doi:10.1093/molbev/msy222>.
Authors:
selac_1.7.5.tar.gz
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selac_1.7.5.tgz(r-4.4-any)selac_1.7.5.tgz(r-4.3-any)
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selac.pdf |selac.html✨
selac/json (API)
# Install 'selac' in R: |
install.packages('selac', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bomeara/selac/issues
- model.fit - Example yeast dataset
- model.fit - Example yeast dataset
- non_zero_pos - Example datasets
- phy - Example yeast dataset
- phy - Example yeast dataset
- yeast.gene - Example yeast dataset
Last updated 3 years agofrom:cfa135e474. Checks:OK: 7. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 31 2024 |
R-4.5-win | OK | Aug 31 2024 |
R-4.5-linux | OK | Aug 31 2024 |
R-4.4-win | OK | Aug 31 2024 |
R-4.4-mac | OK | Aug 31 2024 |
R-4.3-win | OK | Aug 31 2024 |
R-4.3-mac | OK | Aug 31 2024 |
Exports:GetAdequateManyRepsGetAdequateSelacGetFunctionalityGetMarginalAllGenesGetPartitionOrderGetSelacSiteLikelihoodsNucSimulatorSelacOptimizeSelacSimulatorSelacSimulatorEvolvingRatesSelonOptimizeSelonSimulator
Dependencies:ade4apeclicolorspacecpp11data.tabledeSolvedigestexpmfansifarverfastmatchgenericsGenSAggplot2ggseqlogogluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmenloptrnnetphangornpillarpixmappkgconfigquadprogR6RColorBrewerRcppRcppArmadillorlangscalessegmentedseqinrspstatmodtibbleutf8vctrsviridisLitewithrzoo