Package: Rphylopars 0.3.11

Eric W. Goolsby

Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation

Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.

Authors:Eric W. Goolsby [aut, cre], Jorn Bruggeman [aut], Cecile Ane [aut]

Rphylopars_0.3.11.tar.gz
Rphylopars_0.3.11.zip(r-4.7-x86_64)Rphylopars_0.3.11.zip(r-4.7-arm64)Rphylopars_0.3.11.zip(r-4.6-x86_64)Rphylopars_0.3.11.zip(r-4.6-arm64)Rphylopars_0.3.11.zip(r-4.5-x86_64)
Rphylopars_0.3.11.tgz(r-4.6-x86_64)Rphylopars_0.3.11.tgz(r-4.6-arm64)Rphylopars_0.3.11.tgz(r-4.5-x86_64)Rphylopars_0.3.11.tgz(r-4.5-arm64)
Rphylopars_0.3.11.tar.gz(r-4.7-arm64)Rphylopars_0.3.11.tar.gz(r-4.7-x86_64)Rphylopars_0.3.11.tar.gz(r-4.6-arm64)Rphylopars_0.3.11.tar.gz(r-4.6-x86_64)
Rphylopars_0.3.11.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Rphylopars/json (API)

# Install 'Rphylopars' in R:
install.packages('Rphylopars', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ericgoolsby/rphylopars/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

openblascpp

7.41 score 34 stars 1 packages 127 scripts 631 downloads 11 mentions 14 exports 78 dependencies

Last updated from:8536f29e39. Checks:13 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE152
linux-devel-x86_64NOTE197
source / vignettesOK390
linux-release-arm64NOTE279
linux-release-x86_64NOTE345
macos-release-arm64NOTE156
macos-release-x86_64NOTE272
macos-oldrel-arm64NOTE149
macos-oldrel-x86_64NOTE404
windows-devel-arm64NOTE293
windows-devel-x86_64NOTE183
windows-release-arm64NOTE246
windows-release-x86_64NOTE400
windows-oldrel-x86_64NOTE178
wasm-releaseOK287

Exports:anc.reconanova.phylopars.lmfast.SSClogLik.phyloparslogLik.phylopars.lmphyloparsphylopars.lmprint.phyloparsprint.phylopars.lmprint.SSCsimtraitssummary.phyloparssummary.phylopars.lmwrite.phylopars

Dependencies:apebackportsbootbroomcheckmatecliclusterGenerationcodacodetoolscolorspacecombinatcowplotcpp11DEoptimDerivdigestdoBydoParalleldplyrexpmfarverforeachforecastfracdifffuturefuture.applygenericsggplot2globalsgluegtableigraphisobanditeratorslabelinglatticelifecyclelistenvlmtestmagrittrmapsMASSMatrixmnormtmodelrnlmennetnumDerivoptimParallelosqpparallellyphangornphylolmphytoolspillarpkgconfigprogressrpurrrR6RColorBrewerRcppRcppArmadillorlangS7scalesscatterplot3dstringistringrtibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo