Package: phyloclim 0.9.8
![](https://r-universe.dev/static/nobody.jpg)
Christoph Heibl
phyloclim: Integrating Phylogenetics and Climatic Niche Modeling
Implements some methods in phyloclimatic modeling: estimation of ancestral climatic niches, age-range-correlation, niche equivalency test and background-similarity test.
Authors:
phyloclim_0.9.8.tar.gz
phyloclim_0.9.8.zip(r-4.5)phyloclim_0.9.8.zip(r-4.4)phyloclim_0.9.8.zip(r-4.3)
phyloclim_0.9.8.tgz(r-4.4-any)phyloclim_0.9.8.tgz(r-4.3-any)
phyloclim_0.9.8.tar.gz(r-4.5-noble)phyloclim_0.9.8.tar.gz(r-4.4-noble)
phyloclim_0.9.8.tgz(r-4.4-emscripten)phyloclim_0.9.8.tgz(r-4.3-emscripten)
phyloclim.pdf |phyloclim.html✨
phyloclim/json (API)
NEWS
# Install 'phyloclim' in R: |
install.packages('phyloclim', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/heibl/phyloclim/issues
Last updated 5 months agofrom:0bd0d717d9. Checks:OK: 7. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 17 2024 |
R-4.5-win | OK | Aug 17 2024 |
R-4.5-linux | OK | Aug 17 2024 |
R-4.4-win | OK | Aug 17 2024 |
R-4.4-mac | OK | Aug 17 2024 |
R-4.3-win | OK | Aug 17 2024 |
R-4.3-mac | OK | Aug 17 2024 |
Exports:AC.node.transage.range.correlationanc.climbg.similarity.testdi.enmniche.equivalency.testniche.overlapplotAncClimplotPNOpno
Dependencies:apedigestlatticenlmerasterrbibutilsRcppRdpackspterra
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Phyloclimatic Data Analysis | phyloclim-package phyloclim |
Age-Range Correlation | age.range.correlation |
Estimation of Ancestral Climatic Tolerances | anc.clim |
Niche Equivalency and Background Similarity Test | bg.similarity.test niche.equivalency.test niche.tests plot.ntest print.ntest |
Niche overlap for Oxalis enneaphylla and O. lacinita | equ sim |
Quantification of Niche Overlap | niche.overlap |
_Oxalis_ section _Palmatifoliae_ | palmatifoliae PNO sites tree |
Chronograms with Climatic Data on the Y-Axis | plotAncClim |
Plot Predicted Niche Occupancy Profiles | plotPNO |
Predicted Niche Occupancy Profiles | pno |
Weighted means of niche dimensions | pno.weighted.mean |