{
  "_id": "6a49bc4ea279a6f28ab9bbb8",
  "Package": "phyloclim",
  "Version": "0.9.8",
  "Date": "2020-01-18",
  "Title": "Integrating Phylogenetics and Climatic Niche Modeling",
  "Authors@R": "c(\nperson(\"Christoph\", \"Heibl\", email = \"christoph.heibl@gmx.net\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Clement\", \"Calenge\", role = c(\"aut\")))",
  "RdMacros": "Rdpack",
  "Description": "Implements some methods in phyloclimatic modeling:\nestimation of ancestral climatic niches, age-range-correlation,\nniche equivalency test and background-similarity test.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.3.1",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://phylotastic.r-universe.dev",
  "Date/Publication": "2025-02-12 16:59:47 UTC",
  "RemoteUrl": "https://github.com/heibl/phyloclim",
  "RemoteRef": "HEAD",
  "RemoteSha": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
  "Packaged": {
    "Date": "2026-07-05 02:02:38 UTC",
    "User": "root"
  },
  "Author": "Christoph Heibl [aut, cre],\nClement Calenge [aut]",
  "Maintainer": "Christoph Heibl <christoph.heibl@gmx.net>",
  "_user": "phylotastic",
  "_type": "src",
  "_file": "phyloclim_0.9.8.tar.gz",
  "_fileid": "https://r2.ropensci.org/6ebba524fee60f9c1831c2a360429e06235908e1c8eb46abd1277f9d82bb667c",
  "_filesize": 473856,
  "_sha256": "6ebba524fee60f9c1831c2a360429e06235908e1c8eb46abd1277f9d82bb667c",
  "_expires": "2026-10-13T02:07:09.000Z",
  "_created": "2026-07-05T02:02:38.000Z",
  "_published": "2026-07-05T02:07:10.757Z",
  "_jobs": [
    {
      "job": 85184507020,
      "time": 222,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8087432655"
    },
    {
      "job": 85184507027,
      "time": 215,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087432056"
    },
    {
      "job": 85184507045,
      "time": 123,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8087422752"
    },
    {
      "job": 85184507038,
      "time": 133,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087423705"
    },
    {
      "job": 85184277243,
      "time": 221,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087409282"
    },
    {
      "job": 85184507033,
      "time": 152,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8087425544"
    },
    {
      "job": 85184507049,
      "time": 176,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8087428313"
    },
    {
      "job": 85184507057,
      "time": 176,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8087427940"
    },
    {
      "job": 85184507041,
      "time": 173,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8087427753"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011",
  "_status": "success",
  "_upstream": "https://github.com/heibl/phyloclim",
  "_commit": {
    "id": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
    "author": "Christoph Heibl <heibsta@gmx.net>",
    "committer": "Christoph Heibl <heibsta@gmx.net>",
    "message": "Add NEWS.md\n",
    "time": 1739379587
  },
  "_maintainer": {
    "name": "Christoph Heibl",
    "email": "christoph.heibl@gmx.net"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.0",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Depends"
    },
    {
      "package": "raster",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Rdpack",
      "role": "Imports"
    },
    {
      "package": "sp",
      "role": "Imports"
    }
  ],
  "_owner": "heibl",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 5,
  "_contributors": [
    {
      "user": "heibl",
      "count": 7,
      "uuid": 16047205
    }
  ],
  "_userbio": {
    "uuid": 1652822,
    "type": "organization",
    "name": "phylotastic",
    "followers": 5
  },
  "_downloads": {
    "count": 55,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phyloclim"
  },
  "_mentions": 18,
  "_devurl": "https://github.com/heibl/phyloclim",
  "_searchresults": 46,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/phyloclim.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2009-11-30"
    },
    {
      "version": "0.6",
      "date": "2010-10-18"
    },
    {
      "version": "0.8.1",
      "date": "2011-01-21"
    },
    {
      "version": "0.9-0",
      "date": "2012-09-22"
    },
    {
      "version": "0.9-3",
      "date": "2013-04-07"
    },
    {
      "version": "0.9-4",
      "date": "2013-07-13"
    },
    {
      "version": "0.9.5",
      "date": "2018-05-25"
    }
  ],
  "_exports": [
    "AC.node.trans",
    "age.range.correlation",
    "anc.clim",
    "bg.similarity.test",
    "di.enm",
    "niche.equivalency.test",
    "niche.overlap",
    "plotAncClim",
    "plotPNO",
    "pno"
  ],
  "_datasets": [
    {
      "name": "equ",
      "title": "Niche overlap for Oxalis enneaphylla and O. lacinita",
      "object": "equ",
      "file": "equ.rda",
      "class": [
        "ntest"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "PNO",
      "title": "_Oxalis_ section _Palmatifoliae_",
      "object": "PNO",
      "file": "PNO.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "sim",
      "title": "Niche overlap for Oxalis enneaphylla and O. lacinita",
      "object": "sim",
      "file": "sim.rda",
      "class": [
        "ntest"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sites",
      "title": "_Oxalis_ section _Palmatifoliae_",
      "object": "sites",
      "file": "sites.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "spec",
        "long",
        "lat"
      ],
      "rows": 290,
      "table": true,
      "tojson": true
    },
    {
      "name": "tree",
      "title": "_Oxalis_ section _Palmatifoliae_",
      "object": "tree",
      "file": "tree.rda",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "phyloclim-package",
      "title": "Phyloclimatic Data Analysis",
      "topics": [
        "phyloclim-package",
        "phyloclim"
      ]
    },
    {
      "page": "age.range.correlation",
      "title": "Age-Range Correlation",
      "topics": [
        "age.range.correlation"
      ]
    },
    {
      "page": "anc.clim",
      "title": "Estimation of Ancestral Climatic Tolerances",
      "topics": [
        "anc.clim"
      ]
    },
    {
      "page": "niche.tests",
      "title": "Niche Equivalency and Background Similarity Test",
      "topics": [
        "bg.similarity.test",
        "niche.equivalency.test",
        "niche.tests",
        "plot.ntest",
        "print.ntest"
      ]
    },
    {
      "page": "equ",
      "title": "Niche overlap for Oxalis enneaphylla and O. lacinita",
      "topics": [
        "equ",
        "sim"
      ]
    },
    {
      "page": "niche.overlap",
      "title": "Quantification of Niche Overlap",
      "topics": [
        "niche.overlap"
      ]
    },
    {
      "page": "palmatifoliae",
      "title": "_Oxalis_ section _Palmatifoliae_",
      "topics": [
        "palmatifoliae",
        "PNO",
        "sites",
        "tree"
      ]
    },
    {
      "page": "plotAncClim",
      "title": "Chronograms with Climatic Data on the Y-Axis",
      "topics": [
        "plotAncClim"
      ]
    },
    {
      "page": "plotPNO",
      "title": "Plot Predicted Niche Occupancy Profiles",
      "topics": [
        "plotPNO"
      ]
    },
    {
      "page": "pno",
      "title": "Predicted Niche Occupancy Profiles",
      "topics": [
        "pno"
      ]
    },
    {
      "page": "pno.weighted.mean",
      "title": "Weighted means of niche dimensions",
      "topics": [
        "pno.weighted.mean"
      ]
    }
  ],
  "_readme": "https://github.com/heibl/phyloclim/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "digest",
    "lattice",
    "nlme",
    "raster",
    "rbibutils",
    "Rcpp",
    "Rdpack",
    "sp",
    "terra"
  ],
  "_score": 4.060697840353612,
  "_indexed": false,
  "_nocasepkg": "phyloclim",
  "_universes": [
    "phylotastic"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.9.8",
      "date": "2026-07-05T02:04:55.000Z",
      "distro": "resolute",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/cf651a1e06a2194281d26bf0d4edeeb52e1d274a210aba3384618358b83e0cdc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.9.8",
      "date": "2026-07-05T02:05:05.000Z",
      "distro": "resolute",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/38bc18f98c072953b4d01ab450bb9e2f85187826a80667c84ca94b1620e0e802",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.9.8",
      "date": "2026-07-05T02:04:20.000Z",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/0d68b31e4108ca71f90586a9c9e932dd93d9ca8307d2e60ec946a75daef1823b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.9.8",
      "date": "2026-07-05T02:04:25.000Z",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/617133895e0baca8bc3a07571bee386732650fce70c6c9016368d16238535922",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.9.8",
      "date": "2026-07-05T02:05:38.000Z",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/2ab9ef7629597d15710a1c421191187fbbff22348beb85bb60b35693eb9cb227",
      "status": "success",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.9.8",
      "date": "2026-07-05T02:04:07.000Z",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/344efc4b2e05c3775115e028bf7f3ed394b566a6abfa023a6e32a0c5d9459b79",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.9.8",
      "date": "2026-07-05T02:04:05.000Z",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/b2b6d43b5db33b6ec6cd053ba4aec9d87e1d9e08098c4593aa34c77cfe1e7926",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.9.8",
      "date": "2026-07-05T02:03:59.000Z",
      "commit": "4b4e64e1a422869a05db654b77979ddfe76e2a55",
      "fileid": "https://r2.ropensci.org/f5e5249c0a6a99eb789eccd12a6b224d02fbca8cd0adaf7e5c7b66b776078a5d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/28726323011"
    }
  ]
}