Package: FishPhyloMaker 0.2.0
FishPhyloMaker: Phylogenies for a List of Finned-Ray Fishes
Provides an alternative to facilitate the construction of a phylogeny for fish species from a list of species or a community matrix using as a backbone the phylogenetic tree proposed by Rabosky et al. (2018) <doi:10.1038/s41586-018-0273-1>.
Authors:
FishPhyloMaker_0.2.0.tar.gz
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FishPhyloMaker.pdf |FishPhyloMaker.html✨
FishPhyloMaker/json (API)
NEWS
# Install 'FishPhyloMaker' in R: |
install.packages('FishPhyloMaker', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gabrielnakamura/fishphylomaker/issues
- neotropical_comm - Abundance of stream fish species in Parana and Paraguay streams
- spp_afrotropic - List of fish species with occurrence in Afrotropical ecoregion
- taxon_data_PhyloMaker - Data frame with species names needed to assemble the phylogenetic tree
Last updated 9 months agofrom:04373d0770. Checks:OK: 1 NOTE: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 25 2024 |
R-4.5-win | NOTE | Aug 25 2024 |
R-4.5-linux | NOTE | Aug 25 2024 |
R-4.4-win | NOTE | Aug 25 2024 |
R-4.4-mac | NOTE | Aug 25 2024 |
R-4.3-win | NOTE | Aug 25 2024 |
R-4.3-mac | NOTE | Aug 25 2024 |
Exports:FishPhyloMakerFishTaxaMakerPD_deficitwhichFishAdd
Dependencies:apebase64encblobbslibcachemcliclusterGenerationcodacodetoolscolorspacecombinatcpp11crayonDBIdbplyrDEoptimdeSolvedigestdoParalleldplyrduckdbduckdbfsevaluateexpmfansifarverfastmapfastmatchfishtreefontawesomeforeachfsgeigergenericsggplot2ggseqlogogluegtablehighrhmshtmltoolsigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrmapsMASSMatrixmemoisemgcvmimemnormtmunsellmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspillarpkgconfigprettyunitsprogresspurrrquadprogR6rappdirsRColorBrewerRcpprfishbaserlangrmarkdownsassscalesscatterplot3dstringistringrsubplextibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml
How to know which species must be added to phylogeny?
Rendered fromwhichFishAdd_vignette.Rmd
usingknitr::rmarkdown
on Aug 25 2024.Last update: 2021-08-27
Started: 2021-03-31
How to map species insertions in phylogenetic tree?
Rendered frommappingInsertions_vignette.Rmd
usingknitr::rmarkdown
on Aug 25 2024.Last update: 2021-08-27
Started: 2021-04-02
Using FishPhyloMaker to build phylogenies for finned-ray fishes
Rendered fromFishPhyloMaker_vignette.Rmd
usingknitr::rmarkdown
on Aug 25 2024.Last update: 2021-09-08
Started: 2021-03-30