Package: ips 0.0.12
Christoph Heibl
ips: Interfaces to Phylogenetic Software in R
Functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.
Authors:
ips_0.0.12.tar.gz
ips_0.0.12.zip(r-4.5)ips_0.0.12.zip(r-4.4)ips_0.0.12.zip(r-4.3)
ips_0.0.12.tgz(r-4.4-any)ips_0.0.12.tgz(r-4.3-any)
ips_0.0.12.tar.gz(r-4.5-noble)ips_0.0.12.tar.gz(r-4.4-noble)
ips_0.0.12.tgz(r-4.4-emscripten)ips_0.0.12.tgz(r-4.3-emscripten)
ips.pdf |ips.html✨
ips/json (API)
NEWS
| # Install 'ips' in R: |
| install.packages('ips', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/heibl/ips/issues
Last updated 7 months agofrom:2ef779b8ec. Checks:OK: 5 NOTE: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 21 2024 |
| R-4.5-win | NOTE | Nov 21 2024 |
| R-4.5-linux | NOTE | Nov 21 2024 |
| R-4.4-win | OK | Nov 21 2024 |
| R-4.4-mac | OK | Nov 21 2024 |
| R-4.3-win | OK | Nov 21 2024 |
| R-4.3-mac | OK | Nov 21 2024 |
Exports:aliscoreassembleDataNodeassembleDistributionNodeassembleInitNodeassembleLoggersassembleStateNodeassembleTreeNodebeastLogblastncode.simple.gapscollapseUnsupportedEdgescombMyTreedel.missdeleteEmptyCellsdeleteGapsdescendantsDNAbin2indexeoifixNodesforceEqualTipHeightsgblocksidentifyEmptyCellsindex2DNAbinmafftmafft.mergemrbayesmrbayes.lsetmrbayes.mcmcmrbayes.prsetmultistateMCMCmultistateMLneighboringPairsnointipoperatorparameterpartitionfinderpathd8phylo2mafftphylo2mstpisprankraxmlraxml.partitionsrbeautircread.beastread.beast.tableread.fasread.nexread.physistersplitIntoCladesterminal.cladesterminalSisterstipHeightstrimEndsunlistFirstLevelunresolve.cladewrite.faswrite.nexwrite.phy
Dependencies:apeclicpp11data.tabledigestgenericsglueigraphlatticelifecyclemagrittrMatrixnlmephangornpkgconfigplyrquadprogRcppRcppArmadillorlangvctrsXML
