Package: phylogram 2.1.0.9000
phylogram: Dendrograms for Evolutionary Analysis
Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.
Authors:
phylogram_2.1.0.9000.tar.gz
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phylogram_2.1.0.9000.tgz(r-4.4-any)phylogram_2.1.0.9000.tgz(r-4.3-any)
phylogram_2.1.0.9000.tar.gz(r-4.5-noble)phylogram_2.1.0.9000.tar.gz(r-4.4-noble)
phylogram_2.1.0.9000.tgz(r-4.4-emscripten)phylogram_2.1.0.9000.tgz(r-4.3-emscripten)
phylogram.pdf |phylogram.html✨
phylogram/json (API)
# Install 'phylogram' in R: |
install.packages('phylogram', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/phylogram/issues
Last updated 5 years agofrom:9b7ce7672a. Checks:OK: 7. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 25 2024 |
R-4.5-win | OK | Aug 25 2024 |
R-4.5-linux | OK | Aug 25 2024 |
R-4.4-win | OK | Aug 25 2024 |
R-4.4-mac | OK | Aug 25 2024 |
R-4.3-win | OK | Aug 25 2024 |
R-4.3-mac | OK | Aug 25 2024 |
Exports:as.cladogramas.dendrogramas.dendrogram.phyloas.phyloas.phylo.dendrogramladderpruneread.dendrogramremidpointrepositionwrite.dendrogram
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Apply unweighted branch lengths. | as.cladogram |
Convert a "phylo" object to a dendrogram. | as.dendrogram.phylo |
Convert a dendrogram to a "phylo" object. | as.phylo.dendrogram |
Reorder tree branches in ladderized pattern. | ladder |
Dendrograms for evolutionary analysis. | phylogram-package phylogram |
Remove tree nodes by regular expression pattern matching. | prune |
Read a dendrogram from parenthetic text. | read.dendrogram |
Set dendrogram attributes for a nested list. | remidpoint |
Reset dendrogram height attributes. | reposition |
Write a dendrogram object to parenthetic text. | write.dendrogram |