{
  "_id": "6ac8a10ade46216d5edd4c26",
  "Package": "phylogram",
  "Type": "Package",
  "Title": "Dendrograms for Evolutionary Analysis",
  "Version": "2.1.0.9000",
  "Authors@R": "c(person(\"Shaun\", \"Wilkinson\", role = c(\"aut\", \"cre\"),\nemail = \"shaunpwilkinson@gmail.com\",\ncomment = c(ORCID = '0000-0002-7332-7931')),\nperson(\"Simon\", \"Davy\", role = \"aut\",\nemail = \"simon.davy@vuw.ac.nz\",\ncomment = c(ORCID = '0000-0003-3584-5356'))\n)",
  "Maintainer": "Shaun Wilkinson <shaunpwilkinson@gmail.com>",
  "Description": "Contains functions for developing phylogenetic trees as\ndeeply-nested lists (\"dendrogram\" objects). Enables\nbi-directional conversion between dendrogram and \"phylo\"\nobjects (see Paradis et al (2004)\n<doi:10.1093/bioinformatics/btg412>), and features several\ntools for command-line tree manipulation and import/export via\nNewick parenthetic text.",
  "License": "GPL-3",
  "URL": "https://docs.ropensci.org/phylogram,\nhttp://github.com/ropensci/phylogram",
  "BugReports": "http://github.com/ropensci/phylogram/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "6.0.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://phylotastic.r-universe.dev",
  "Date/Publication": "2019-12-09 21:21:51 UTC",
  "RemoteUrl": "http://github.com/ropensci/phylogram",
  "RemoteRef": "HEAD",
  "RemoteSha": "9b7ce7672a048937d702d27205d5d212bf802305",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-09 08:03:12 UTC",
    "User": "root"
  },
  "Author": "Shaun Wilkinson [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7332-7931>),\nSimon Davy [aut] (ORCID: <https://orcid.org/0000-0003-3584-5356>)",
  "_user": "phylotastic",
  "_type": "src",
  "_file": "phylogram_2.1.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/d1a717683ba365314bfd1e87bec78b2806cc394de6d18cd64c8f2aa2ad6e0846",
  "_filesize": 1921721,
  "_sha256": "d1a717683ba365314bfd1e87bec78b2806cc394de6d18cd64c8f2aa2ad6e0846",
  "_expires": "2027-01-17T08:08:40.000Z",
  "_created": "2026-10-09T08:03:12.000Z",
  "_published": "2026-10-09T08:08:42.335Z",
  "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113729193368,
      "time": 118,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11603111959"
    },
    {
      "job": 113729193486,
      "time": 156,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11603740559"
    },
    {
      "job": 113729193460,
      "time": 74,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11602859922"
    },
    {
      "job": 113729193483,
      "time": 110,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11603491104"
    },
    {
      "job": 113727502480,
      "time": 308,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11603485708"
    },
    {
      "job": 113729193350,
      "time": 93,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11603695420"
    },
    {
      "job": 113729193448,
      "time": 73,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11603226440"
    },
    {
      "job": 113729193417,
      "time": 84,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11603096851"
    },
    {
      "job": 113729193335,
      "time": 69,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11602059830"
    }
  ],
  "_upstream": "http://github.com/ropensci/phylogram",
  "_commit": {
    "id": "9b7ce7672a048937d702d27205d5d212bf802305",
    "author": "rOpenSci Bot <myrmecocystus+ropenscibot@gmail.com>",
    "committer": "rOpenSci Bot <myrmecocystus+ropenscibot@gmail.com>",
    "message": "Add links to official docs site.\nFor more details: https://ropensci.org/technotes/2019/06/07/ropensci-docs/\n",
    "time": 1575926511
  },
  "_maintainer": {
    "name": "Shaun Wilkinson",
    "email": "shaunpwilkinson@gmail.com",
    "login": "shaunpwilkinson",
    "description": "Managing Director at Wilderlab",
    "uuid": 10361217,
    "orcid": "0000-0002-7332-7931"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "ape",
      "version": ">= 4.0",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "dendextend",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": false,
  "_usedby": 10,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "peer-reviewed"
  ],
  "_stars": 12,
  "_contributors": [
    {
      "user": "shaunpwilkinson",
      "count": 85,
      "uuid": 10361217
    }
  ],
  "_userbio": {
    "uuid": 1652822,
    "type": "organization",
    "name": "phylotastic",
    "followers": 5
  },
  "_downloads": {
    "count": 870,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phylogram"
  },
  "_mentions": 44,
  "_devurl": "https://github.com/ropensci/phylogram",
  "_pkgdown": "https://docs.ropensci.org/phylogram",
  "_searchresults": 259,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/phylogram.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/ropensci/phylogram",
  "_realowner": "ropensci",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-06-12"
    },
    {
      "version": "1.0.1",
      "date": "2017-06-14"
    },
    {
      "version": "2.0.0",
      "date": "2018-04-10"
    },
    {
      "version": "2.0.1",
      "date": "2018-04-13"
    },
    {
      "version": "2.1.0",
      "date": "2018-06-25"
    }
  ],
  "_exports": [
    "as.cladogram",
    "as.dendrogram",
    "as.dendrogram.phylo",
    "as.phylo",
    "as.phylo.dendrogram",
    "ladder",
    "prune",
    "read.dendrogram",
    "remidpoint",
    "reposition",
    "write.dendrogram"
  ],
  "_help": [
    {
      "page": "as.cladogram",
      "title": "Apply unweighted branch lengths.",
      "topics": [
        "as.cladogram"
      ]
    },
    {
      "page": "as.dendrogram.phylo",
      "title": "Convert a \"phylo\" object to a dendrogram.",
      "topics": [
        "as.dendrogram.phylo"
      ]
    },
    {
      "page": "as.phylo.dendrogram",
      "title": "Convert a dendrogram to a \"phylo\" object.",
      "topics": [
        "as.phylo.dendrogram"
      ]
    },
    {
      "page": "ladder",
      "title": "Reorder tree branches in ladderized pattern.",
      "topics": [
        "ladder"
      ]
    },
    {
      "page": "phylogram",
      "title": "Dendrograms for evolutionary analysis.",
      "topics": [
        "phylogram-package",
        "phylogram"
      ]
    },
    {
      "page": "prune",
      "title": "Remove tree nodes by regular expression pattern matching.",
      "topics": [
        "prune"
      ]
    },
    {
      "page": "read.dendrogram",
      "title": "Read a dendrogram from parenthetic text.",
      "topics": [
        "read.dendrogram"
      ]
    },
    {
      "page": "remidpoint",
      "title": "Set dendrogram attributes for a nested list.",
      "topics": [
        "remidpoint"
      ]
    },
    {
      "page": "reposition",
      "title": "Reset dendrogram height attributes.",
      "topics": [
        "reposition"
      ]
    },
    {
      "page": "write.dendrogram",
      "title": "Write a dendrogram object to parenthetic text.",
      "topics": [
        "write.dendrogram"
      ]
    }
  ],
  "_readme": "http://github.com/ropensci/phylogram/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "digest",
    "lattice",
    "nlme",
    "Rcpp"
  ],
  "_vignettes": [
    {
      "source": "phylogram-vignette.Rmd",
      "filename": "phylogram-vignette.html",
      "title": "phylogram: an R package for phylogenetic analysis with dendrograms",
      "author": "Shaun P. Wilkinson ^1,2^ and Simon K. Davy ^1^",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Abstract",
        "Introduction",
        "The phylogram package",
        "Importing and exporting trees",
        "Example 1: Import and export a tree from a Newick string",
        "Converting tree objects",
        "Example 2: Convert a \"phylo\" object to a dendrogram",
        "Tree editing/manipulation",
        "Example 3: Building and manipulating dendrograms",
        "Tree visualization",
        "Summary",
        "Acknowledgements",
        "Author Contributions",
        "References"
      ],
      "created": "2017-01-18 03:18:28",
      "modified": "2018-06-26 05:06:12",
      "commits": 28
    }
  ],
  "_score": 7.668572269184558,
  "_indexed": false,
  "_nocasepkg": "phylogram",
  "_universes": [
    "phylotastic"
  ],
  "_indexurl": "https://ropensci.r-universe.dev/phylogram",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:07:21.000Z",
      "distro": "resolute",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/84933b5fb8b26e4855684acd2386dd4d910e9d620a6cd5ef5f516e913a89f8ed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:07:56.000Z",
      "distro": "resolute",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/336eab98aeecd3ba045abc3a6e791910e66096be08a9d637339bc96c3b8e86c9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:06:59.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/41d6caca5346d6c6f8c23da0fe1ac4cba139e623622548d99422391a43fa1c2f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:07:39.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/f6f8ed08f3485bca6a15f0db73ec030590593988ad6dca581757bdeee6e8ebdf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:07:10.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/95088a9be74e282efb95920b850557325605efa60332a563220fd4078ed625ad",
      "status": "success",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:06:28.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/f09afea0d0e15b4b95b5e550b354121ad592f8202faba515db367ce9c8434cfa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:06:42.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/3b95f737b288e78c8871a84fffbe34f9eb1f7a2a483d54d33d3e1fb0c23169c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.1.0.9000",
      "date": "2026-10-09T08:06:26.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/b6477c06966c1f9b8145e57f24dbadcce01baa9173106a26b042d13776e5a45b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/37902267624"
    }
  ]
}