Package: TBRDist 1.0.2
TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees
Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>.
Authors:
TBRDist_1.0.2.tar.gz
TBRDist_1.0.2.zip(r-4.5)TBRDist_1.0.2.zip(r-4.4)TBRDist_1.0.2.zip(r-4.3)
TBRDist_1.0.2.tgz(r-4.4-x86_64)TBRDist_1.0.2.tgz(r-4.4-arm64)TBRDist_1.0.2.tgz(r-4.3-x86_64)TBRDist_1.0.2.tgz(r-4.3-arm64)
TBRDist_1.0.2.tar.gz(r-4.5-noble)TBRDist_1.0.2.tar.gz(r-4.4-noble)
TBRDist_1.0.2.tgz(r-4.4-emscripten)TBRDist_1.0.2.tgz(r-4.3-emscripten)
TBRDist.pdf |TBRDist.html✨
TBRDist/json (API)
NEWS
# Install 'TBRDist' in R: |
install.packages('TBRDist', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ms609/tbrdist/issues
phylogeneticstree-distancedistance-calculationphylogenetic-trees
Last updated 3 years agofrom:9765597e84. Checks:OK: 1 NOTE: 8. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 06 2024 |
R-4.5-win-x86_64 | NOTE | Sep 06 2024 |
R-4.5-linux-x86_64 | NOTE | Sep 06 2024 |
R-4.4-win-x86_64 | NOTE | Sep 06 2024 |
R-4.4-mac-x86_64 | NOTE | Sep 06 2024 |
R-4.4-mac-aarch64 | NOTE | Sep 06 2024 |
R-4.3-win-x86_64 | NOTE | Sep 06 2024 |
R-4.3-mac-x86_64 | NOTE | Sep 06 2024 |
R-4.3-mac-aarch64 | NOTE | Sep 06 2024 |
Exports:.CatchBadPair.DistReturn.PrepareTreesMAFInfoReplugDistTBRDistUSPRDist
Dependencies:apebase64encBHbitbit64bitopsbslibcachemclicolorspacecommonmarkcrayondigestfastmapfastmatchfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclemagrittrmemoisemimenlmePlotToolspromisesR.cacheR.methodsS3R.ooR.utilsR6rappdirsrbibutilsRcppRCurlRdpackrlangsassshinyshinyjssourcetoolsTreeDistTreeToolswithrxtable
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate SPR, TBR and Replug distances on unrooted trees | MAFInfo ReplugDist TBRDist TreeRearrangementDistances USPRDist |