Package: phylotools 0.2.5

Jinlong Zhang

phylotools: Phylogenetic Tools for Eco-Phylogenetics

A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

Authors:Jinlong Zhang [aut, cre], Nancai Pei [ctb], Xiangcheng Mi [ctb]

phylotools_0.2.5.tar.gz
phylotools_0.2.5.zip(r-4.7)phylotools_0.2.5.zip(r-4.6)phylotools_0.2.5.zip(r-4.5)
phylotools_0.2.5.tgz(r-4.6-any)phylotools_0.2.5.tgz(r-4.5-any)
phylotools_0.2.5.tar.gz(r-4.7-any)phylotools_0.2.5.tar.gz(r-4.6-any)
phylotools_0.2.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phylotools/json (API)

# Install 'phylotools' in R:
install.packages('phylotools', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helixcn/phylotools/issues

On CRAN:

Conda:

6.58 score 15 stars 509 scripts 25 downloads 10 mentions 12 exports 5 dependencies

Last updated from:b8716a4b9c. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE115
source / vignettesOK162
linux-release-x86_64NOTE104
macos-release-arm64NOTE80
macos-oldrel-arm64NOTE85
windows-develNOTE85
windows-releaseNOTE79
windows-oldrelNOTE78
wasm-releaseOK98

Exports:clean.fasta.namedat2fastadat2phylipget.fasta.nameget.phylip.nameread.fastaread.phyliprename.fastarm.sequence.fastasplit_datsub.taxa.labelsupermat

Dependencies:apedigestlatticenlmeRcpp

Building supermatrix matrices using the phylotools package

Jinlong Zhang

Rendered fromphylotools-vignette.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2021-03-24
Started: 2021-02-09