Package: phylotools 0.2.5

Jinlong Zhang

phylotools: Phylogenetic Tools for Eco-Phylogenetics

A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

Authors:Jinlong Zhang [aut, cre], Nancai Pei [ctb], Xiangcheng Mi [ctb]

phylotools_0.2.5.tar.gz
phylotools_0.2.5.zip(r-4.7)phylotools_0.2.5.zip(r-4.6)phylotools_0.2.5.zip(r-4.5)
phylotools_0.2.5.tgz(r-4.6-any)phylotools_0.2.5.tgz(r-4.5-any)
phylotools_0.2.5.tar.gz(r-4.7-any)phylotools_0.2.5.tar.gz(r-4.6-any)
phylotools_0.2.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phylotools/json (API)

# Install 'phylotools' in R:
install.packages('phylotools', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helixcn/phylotools/issues

On CRAN:

Conda:

6.61 score 15 stars 537 scripts 36 downloads 10 mentions 12 exports 5 dependencies

Last updated from:b8716a4b9c. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE117
source / vignettesOK186
linux-release-x86_64NOTE111
macos-release-arm64NOTE119
macos-oldrel-arm64NOTE160
windows-develNOTE73
windows-releaseNOTE70
windows-oldrelNOTE68
wasm-releaseOK103

Exports:clean.fasta.namedat2fastadat2phylipget.fasta.nameget.phylip.nameread.fastaread.phyliprename.fastarm.sequence.fastasplit_datsub.taxa.labelsupermat

Dependencies:apedigestlatticenlmeRcpp

Building supermatrix matrices using the phylotools package

Jinlong Zhang

Rendered fromphylotools-vignette.Rmdusingknitr::rmarkdownon Jun 11 2026.

Last update: 2021-03-24
Started: 2021-02-09