Package: BMhyb 2.1.5

Dwueng-Chwuan Jhwueng

BMhyb: Comparative Methods for Phylogenetic Networks

Analyze the phenotypic evolution of species of hybrid origin on a phylogenetic network. This can detect a burst of variation at the formation of a hybrid as well as an increase or decrease in trait value at a hybridization event. Parameters are estimated by maximum likelihood, and model averaging can be done automatically. Users need to enter a comparative data set and a phylogenetic network.

Authors:Dwueng-Chwuan Jhwueng [aut, cre], Brian C. O'Meara [aut]

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Peer review:

Bug tracker:https://github.com/bomeara/bmhyb/issues

On CRAN:

10 exports 0.00 score 90 dependencies 62 scripts 27 downloads

Last updated 3 years agofrom:22709ce279. Checks:OK: 1 NOTE: 6. Indexed: no.

Exports:AddHybridizationBMhybBMhybExhaustiveComputeLikelihoodComputeVCVConvertEvonetToIgraphWithNodeNumbersCreateHybridlessEvonetMergeExhaustiveForPlottingSimulateNetworkSimulateTips

Dependencies:apebackportscachemcheckmateclassclassIntcliclusterGenerationcodacodetoolscolorspacecombinatcorpcorcowplotcpp11data.tableDBIDEoptimdeSolvedigestdoParallele1071expmfansifarverfastmapfastmatchforeachFormulaformula.toolsgeigergenericsggplot2ggseqlogogluegridExtragtableigraphisobanditeratorsKernSmoothlabelinglatticelhslifecyclelubridatemagrittrmapsMASSMatrixmemoisemetRmgcvmnormtmunsellmvtnormncbitnlmenumDerivoperator.toolsoptimParallelphangornphytoolspillarpkgconfigplyrproxypurrrquadprogR6RColorBrewerRcpprlangs2scalesscatterplot3dsfstringistringrsubplextibbletimechangeTreeSimunitsutf8vctrsviridisviridisLitewithrwk