Package: phyloregion 1.0.9
![](https://github.com/darunabas/phyloregion/raw/HEAD/man/figures/logo.png)
phyloregion: Biogeographic Regionalization and Macroecology
Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).
Authors:
phyloregion_1.0.9.tar.gz
phyloregion_1.0.9.zip(r-4.5)phyloregion_1.0.9.zip(r-4.4)phyloregion_1.0.9.zip(r-4.3)
phyloregion_1.0.9.tgz(r-4.4-any)phyloregion_1.0.9.tgz(r-4.3-any)
phyloregion_1.0.9.tar.gz(r-4.5-noble)phyloregion_1.0.9.tar.gz(r-4.4-noble)
phyloregion_1.0.9.tgz(r-4.4-emscripten)phyloregion_1.0.9.tgz(r-4.3-emscripten)
phyloregion.pdf |phyloregion.html✨
phyloregion/json (API)
NEWS
# Install 'phyloregion' in R: |
install.packages('phyloregion', repos = c('https://phylotastic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/darunabas/phyloregion/issues
- africa - Plants of southern Africa
Last updated 7 months agofrom:5ae04da3c5. Checks:OK: 3 NOTE: 4. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 25 2024 |
R-4.5-win | NOTE | Aug 25 2024 |
R-4.5-linux | NOTE | Aug 25 2024 |
R-4.4-win | NOTE | Aug 25 2024 |
R-4.4-mac | NOTE | Aug 25 2024 |
R-4.3-win | OK | Aug 25 2024 |
R-4.3-mac | OK | Aug 25 2024 |
Exports:arc_labelsbackgbeta_corebeta_disschoroplethcoldspotscollapse_rangecountsdense2longdense2sparsedirpathEDGEevol_distinctfishnetfitgomfunctional_betaget_cladeshexcolshotspotsindicatorsinfomaplong2denselong2sparsemap_traitmatch_phylo_commMatrixmean_distnodepieoptimal_phyloregionPDPD_sesphylo_endemismphylobetaphylobeta_corephylobeta_sesphylobuilderphyloregionplot_NMDSplot_pieplot.phyloregionplot.sparsepoints2commpolys2commrandom_speciesrandpointsrast_hotspotrast_quantilerast2commread.communityRPDsdmselect_linkageselectbylocationsparse2densesparse2longsparseMatrixtext_NMDStimeslicetree_samplerunifracweighted_endemism
Dependencies:abindapebetapartclassclassIntcliclusterclustMixTypecodetoolscolorspacecombinatcpp11DBIdigestdoSNOWdplyre1071fansifarverfastmatchforeachgenericsgeometryggplot2ggseqlogogluegtableigraphisobanditeratorsitertoolsKernSmoothlabelinglatticelifecyclelinproglpSolvemagicmagrittrmaptpxMASSMatrixmgcvminpack.lmmunsellnlmepermutephangornpicantepillarpkgconfigpredictsproxyquadprogR6rcddRColorBrewerRcppRcppProgressrlangs2scalessfslamsmoothrsnowterratibbletidyselectunitsutf8vctrsveganviridisLitewithrwk
An introduction to the phyloregion package
Rendered fromphyloregion-intro.Rmd
usingknitr::rmarkdown
on Aug 25 2024.Last update: 2022-11-16
Started: 2020-01-14
Benchmarking phyloregion
Rendered fromBenchmark.Rmd
usingknitr::rmarkdown
on Aug 25 2024.Last update: 2022-11-16
Started: 2020-01-14
Fast Evolutionary Distinctiveness
Rendered fromed.Rmd
usingknitr::rmarkdown
on Aug 25 2024.Last update: 2022-11-16
Started: 2020-12-14