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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "treeducken" in publications use:'
type: software
license: GPL-3.0-only
title: 'treeducken: Nested Phylogenetic Tree Simulator'
version: 1.1.0.9999
doi: 10.32614/CRAN.package.treeducken
abstract: 'Simulates nested phylogenetic trees (gene trees in species tree, symbiont
  trees in host trees) using birth-death processes and transfers between lineages.
  Simulations of gene trees within species trees are performed using a three-tree
  model with species trees, locus trees, and gene trees. The cophylogenetic birth-death
  process is used to simulate sets of host and symbiont trees with extant associations
  between tips. For more information about the three-tree model see: Mallo et al.
  (2015) <https://doi.org/10.1093/sysbio/syv082>, Rasmussen and Kellis (2012) <https://doi.org/10.1101/gr.123901.111>.'
authors:
- family-names: Dismukes
  given-names: Wade
  email: wade.dismukes@gmail.com
- family-names: Heath
  given-names: Tracy A.
repository: https://phylotastic.r-universe.dev
commit: 032b92e3b4294f960854a0b497f6f87330db63ee
date-released: '2023-03-19'
contact:
- family-names: Dismukes
  given-names: Wade
  email: wade.dismukes@gmail.com