hs_mode from a boolean to a string. Can now use switch, spread, or both.summarize_cophy the function would stop when encountering a dataset where the Parafit couldn't be calculated.summarize_1cophy would have NA as the column name if the column value had NAevent_history data framesim_cophyloBD (formerly sim_cophylo_bdp) now has two arguments:
host_limit controlling the number of hosts a symbiont is allowed to have at one timehs_mode which changes host expansion events to host switch events (h_exp_r is still used to change the rate)sim_cophyloBD_ana which adds anagenetic events (i.e., happening between speciation nodes) to the functionality of sim_cophyloBDshow_div_bar option added to plot. This outputs a bar showing the different events as tick marks.association_mat from hosts in columns and symbionts in rows to hosts in rows and symbionts in columns.First release of software can currently simulate:
Other features: