Package: selac
Type: Package
Title: Selection Models for Amino Acid and/or Codon Evolution
Version: 1.7.5
Date: 2020-06-15
Authors@R: c(person("Jeremy", "Beaulieu", role=c("aut", "cre"),
                     email = "jmbeauli@uark.edu"),
                     person("JJ", "Chai", role=c("aut")),
                     person("Mike", "Gilchrist", role=c("aut")),
                     person("Cedric", "Landerer", role=c("aut")),
                     person("Graham", "Derryberry", role=c("aut")),
                     person("Brian", "O'Meara", role=c("aut")))
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Description: Sets up and executes a SelAC model (Selection on Amino
        acids and codons) for testing the presence of selection in
        amino acid or codon among a set of genes on a fixed phylogeny.
        Beaulieu et al (2019) <doi:10.1093/molbev/msy222>.
Suggests: testthat, igraph, phytools
Imports: ape, deSolve, nloptr, nnet, data.table, expm, MASS, Matrix,
        methods, parallel, phangorn, seqinr, statmod, zoo,
        RColorBrewer, GenSA
License: GPL
ByteCompile: TRUE
RoxygenNote: 7.1.0
Encoding: UTF-8
Config/pak/sysreqs: cmake libglpk-dev make libxml2-dev zlib1g-dev
Repository: https://phylotastic.r-universe.dev
Date/Publication: 2021-11-08 15:59:30 UTC
RemoteUrl: https://github.com/bomeara/selac
RemoteRef: HEAD
RemoteSha: cfa135e47406bb1d2e57d41c682af0e32bbaabd0
NeedsCompilation: no
Packaged: 2026-06-02 19:03:06 UTC; root
Author: Jeremy Beaulieu [aut, cre],
  JJ Chai [aut],
  Mike Gilchrist [aut],
  Cedric Landerer [aut],
  Graham Derryberry [aut],
  Brian O'Meara [aut]