Package: phrapl Version: 0.6.5 Date: 2021-02-05 Title: Phylogeography using Approximate Likelihood Authors@R: c(person("Brian", "O'Meara", role = c("aut", "cre"), email = "omeara.brian@gmail.com"), person("Bryan", "Carstens", role = "aut"), person("Nathan", "Jackson", role = "aut"), person("Ariadna", "Morales-Garcia", role = "aut")) Imports: ape, binom, diagram, partitions, igraph, optimx, parallel, nloptr, Matrix, numDeriv, rgl, RColorBrewer, rgenoud, stats, utils, graphics, grDevices, phyclust Suggests: testthat (>= 2.1.0), animation, knitr, rmarkdown, covr Description: This creates and compares models for population structure within a species or between several related species, especially for questions in phylogeography. It can also help delimit populations into species. Models used can range from island models (populations exchanging genes through migration) to phylogeny models (populations splitting with no subsequent gene flow) to anything in between, such as subdivision with some gene flow. Input data are gene tree topologies. Models are fit using approximate likelihood: simulating gene tree evolution many times on the various population trees to estimate the likelihood of seeing the observed gene topologies. Depends: R (>= 3.5.0) SystemRequirements: perl LazyData: no License: GPL (>= 2) Encoding: UTF-8 RoxygenNote: 7.1.0 VignetteBuilder: knitr Config/pak/sysreqs: cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev libgmp3-dev make texlive libpng-dev libuv1-dev libxml2-dev libgl1-mesa-dev perl zlib1g-dev Repository: https://phylotastic.r-universe.dev Date/Publication: 2021-02-06 04:42:35 UTC RemoteUrl: https://github.com/bomeara/phrapl RemoteRef: HEAD RemoteSha: 318b236693bcfc8d763fdbde49bd10ecd2bc861f NeedsCompilation: no Packaged: 2026-07-15 06:17:35 UTC; root Author: Brian O'Meara [aut, cre], Bryan Carstens [aut], Nathan Jackson [aut], Ariadna Morales-Garcia [aut] Maintainer: Brian O'Meara