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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "paleotree" in publications use:'
type: software
license: CC0-1.0
title: 'paleotree: Paleontological and Phylogenetic Analyses of Evolution'
version: 3.4.7
doi: 10.1111/j.2041-210X.2012.00223.x
identifiers:
- type: doi
  value: 10.32614/CRAN.package.paleotree
abstract: Provides tools for transforming, a posteriori time-scaling, and modifying
  phylogenies containing extinct (i.e. fossil) lineages. In particular, most users
  are interested in the functions timePaleoPhy, bin_timePaleoPhy, cal3TimePaleoPhy
  and bin_cal3TimePaleoPhy, which date cladograms of fossil taxa using stratigraphic
  data. This package also contains a large number of likelihood functions for estimating
  sampling and diversification rates from different types of data available from the
  fossil record (e.g. range data, occurrence data, etc). paleotree users can also
  simulate diversification and sampling in the fossil record using the function simFossilRecord,
  which is a detailed simulator for branching birth-death-sampling processes composed
  of discrete taxonomic units arranged in ancestor-descendant relationships. Users
  can use simFossilRecord to simulate diversification in incompletely sampled fossil
  records, under various models of morphological differentiation (i.e. the various
  patterns by which morphotaxa originate from one another), and with time-dependent,
  longevity-dependent and/or diversity-dependent rates of diversification, extinction
  and sampling. Additional functions allow users to translate simulated ancestor-descendant
  data from simFossilRecord into standard time-scaled phylogenies or unscaled cladograms
  that reflect the relationships among taxon units.
authors:
- family-names: Bapst
  given-names: David W.
  email: dwbapst@gmail.com
- family-names: Bapst
  given-names: David W.
- family-names: Wagner
  given-names: Peter J.
preferred-citation:
  type: article
  title: 'paleotree: Paleontological and Phylogenetic Analyses of Evolution'
  authors:
  - family-names: Bapst
    given-names: David W.
    email: dwbapst@gmail.com
  journal: Methods in Ecology and Evolution
  issue: '3'
  year: '2012'
  doi: 10.1111/j.2041-210X.2012.00223.x
  start: 803-807
repository: https://phylotastic.r-universe.dev
repository-code: https://github.com/dwbapst/paleotree
commit: 72ad91ba4ce2aa5edd07624291c1abc9df305e5c
url: https://github.com/dwbapst/paleotree
date-released: '2024-07-06'
contact:
- family-names: Bapst
  given-names: David W.
  email: dwbapst@gmail.com