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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "nichevol" in publications use:'
type: software
license: GPL-3.0-only
title: 'nichevol: Tools for Ecological Niche Evolution Assessment Considering Uncertainty'
version: 0.1.20
doi: 10.1002/ece3.6359
identifiers:
- type: doi
  value: 10.32614/CRAN.package.nichevol
abstract: 'A collection of tools that allow users to perform critical steps in the
  process of assessing ecological niche evolution over phylogenies, with uncertainty
  incorporated explicitly in reconstructions. The method proposed here for ancestral
  reconstruction of ecological niches characterizes species'' niches using a bin-based
  approach that incorporates uncertainty in estimations. Compared to other existing
  methods, the approaches presented here reduce risk of overestimation of amounts
  and rates of ecological niche evolution. The main analyses include: initial exploration
  of environmental data in occurrence records and accessible areas, preparation of
  data for phylogenetic analyses, executing comparative phylogenetic analyses of ecological
  niches, and plotting for interpretations. Details on the theoretical background
  and methods used can be found in: Owens et al. (2020) <https://doi.org/10.1002/ece3.6359>,
  Peterson et al. (1999) <https://doi.org/10.1126/science.285.5431.1265>, Soberón
  and Peterson (2005) <https://doi.org/10.17161/bi.v2i0.4>, Peterson (2011) <https://doi.org/10.1111/j.1365-2699.2010.02456.x>,
  Barve et al. (2011) <https://doi.org/10.1111/ecog.02671>, Machado-Stredel et al.
  (2021) <https://doi.org/10.21425/F5FBG48814>, Owens et al. (2013) <https://doi.org/10.1016/j.ecolmodel.2013.04.011>,
  Saupe et al. (2018) <https://doi.org/10.1093/sysbio/syx084>, and Cobos et al. (2021)
  <https://doi.org/10.1111/jav.02868>.'
authors:
- family-names: Cobos
  given-names: Marlon E.
  email: manubio13@gmail.com
- family-names: Owens
  given-names: Hannah L.
  email: hannah.owens@gmail.com
- family-names: Peterson
  given-names: A. Townsend
  email: town@ku.edu
preferred-citation:
  type: article
  title: Acknowledging uncertainty in evolutionary reconstructions of ecological niches
  authors:
  - family-names: Owens
    given-names: Hannah L.
    email: hannah.owens@gmail.com
  - family-names: Ribeiro
    given-names: Vivian
  - family-names: Saupe
    given-names: Erin E.
  - family-names: Cobos
    given-names: Marlon E.
    email: manubio13@gmail.com
  - family-names: Hosner
    given-names: Peter A.
  - family-names: Cooper
    given-names: Jacob C.
  - family-names: Samy
    given-names: Abdallah M.
  - family-names: Barve
    given-names: Vijay
  - family-names: Barve
    given-names: Narayani
  - family-names: Muñoz-R
    given-names: Carlos J.
  - family-names: Peterson
    given-names: A. Townsend
    email: town@ku.edu
  journal: Ecology and Evolution
  year: '2020'
  volume: '10'
  issue: '14'
  url: https://doi.org/10.1002/ece3.6359
  doi: 10.1002/ece3.6359
  start: 6967–6977
repository: https://phylotastic.r-universe.dev
repository-code: https://github.com/marlonecobos/nichevol
commit: e3a1112b803b5ac38c5bc5b1422423f80e509b5a
url: https://github.com/marlonecobos/nichevol
date-released: '2023-03-09'
contact:
- family-names: Cobos
  given-names: Marlon E.
  email: manubio13@gmail.com