Package: hisse
Version: 2.1.13
Date: 2025-8-5
Title: Hidden State Speciation and Extinction
Authors@R: c(person("Jeremy", "Beaulieu", role=c("aut", "cre"),
                     email = "jmbeauli@uark.edu"),
                     person("Brian", "O'Meara", role=c("aut")),
		      person("Daniel", "Caetano", role=c("aut")),
			person("James", "Boyko", role=c("aut")),
			   person("Thais", "Vasconcelos", role=c("aut")))
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Depends: ape, deSolve, GenSA, subplex, nloptr
Suggests: testthat, knitr, rmarkdown, markdown
Imports: parallel, phytools, data.table, igraph, methods, diversitree,
        paleotree, plotrix, geiger, phangorn, TreeSim, corHMM
Description: Sets up and executes a HiSSE model (Hidden State
        Speciation and Extinction) on a phylogeny and character sets to
        test for hidden shifts in trait dependent rates of
        diversification. Beaulieu and O'Meara (2016)
        <doi:10.1093/sysbio/syw022>.
License: GPL (>= 2)
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfftw3-dev libglpk-dev libgmp3-dev make
        libgsl0-dev libpng-dev libxml2-dev libmpfr-dev
Repository: https://phylotastic.r-universe.dev
Date/Publication: 2026-04-14 14:15:46 UTC
RemoteUrl: https://github.com/thej022214/hisse
RemoteRef: HEAD
RemoteSha: f5079fdc7066071146077d88992ba4a4d5ac9f52
NeedsCompilation: yes
Packaged: 2026-06-12 22:03:02 UTC; root
Author: Jeremy Beaulieu [aut, cre],
  Brian O'Meara [aut],
  Daniel Caetano [aut],
  James Boyko [aut],
  Thais Vasconcelos [aut]