This R package facilitates the aggregation of species' geographic ranges from vector or raster spatial data, and enables the calculation of various morphological and phylogenetic community metrics across geography, with a particular focus on handling of geometric morphometric data.
The following R package dependencies are required:
terra, sf, ape, viridisLite, pbapply, Rcpp
Additionally, the R packages exactextractr, tmap, data.table and
spdep provide
additional functionality or speed improvements, and are recommended.
The current release of epm can be downloaded from CRAN.
To install the latest development version from GitHub, run the following in R: remotes::install_github('ptitle/epm')
Check out the wiki for explanations and discussions of the available options.
If you use this R package, please cite the accompanying article:
Pascal O. Title, Donald L. Swiderski and Miriam L. Zelditch. 2022. EcoPhyloMapper: an R package for integrating geographic ranges, phylogeny, and morphology. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13914