Package: corHMM
Version: 2.10.4
Date: 2026-05-14
Title: Hidden Markov Models of Character Evolution
Authors@R: c(person("Jeremy", "Beaulieu", role=c("aut", "cre"),
                     email = "jmbeauli@uark.edu"),
             person("Brian", "O'Meara", role=c("aut")),
             person("Jeffrey", "Oliver", role=c("aut")),
             person("James", "Boyko", role=c("aut")),
             person("Haoyu", "Ji", role=c("ctb")),
             person("Ben", "Bolker", role=c("ctb")))
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Depends: ape, nloptr, GenSA
Suggests: testthat, knitr, rmarkdown, dentist
Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel,
        viridis, Rmpfr, igraph, phytools, lhs, RTMB, Matrix
Description: Fits hidden Markov models of discrete character evolution
        which allow different transition rate classes on different
        portions of a phylogeny. Beaulieu et al (2013)
        <doi:10.1093/sysbio/syt034>.
License: GPL (>= 2)
Remotes: bomeara/dentist
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake libglpk-dev libgmp3-dev make libxml2-dev
        libmpfr-dev
Repository: https://phylotastic.r-universe.dev
Date/Publication: 2026-05-30 19:16:59 UTC
RemoteUrl: https://github.com/thej022214/corHMM
RemoteRef: HEAD
RemoteSha: ddadab2f62bd0bc569f2e20eba9f7073d8bdc07d
NeedsCompilation: no
Packaged: 2026-06-12 22:03:04 UTC; root
Author: Jeremy Beaulieu [aut, cre],
  Brian O'Meara [aut],
  Jeffrey Oliver [aut],
  James Boyko [aut],
  Haoyu Ji [ctb],
  Ben Bolker [ctb]