Type: Package
Package: bayou
Title: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Version: 2.3.2
Date: 2026-02-04
Authors@R: c(
    person("Josef C.", "Uyeda", ,"juyeda@vt.edu", role = c("aut", "cre"),
    	comment = c(ORCID = "0000-0003-4624-9680")),
    person("Jon", "Eastman", role = "ctb"),
    person("Luke", "Harmon", , "lukeh@uidaho.edu", role = "ctb", 
    	comment = c(ORCID = "0000-0002-4985-5750")), 
    person("Abhishek", "Hari", , "abhihari010@vt.edu", role = "ctb")
    )
Maintainer: Josef C. Uyeda <juyeda@vt.edu>
Description: Fits and simulates multi-optima Ornstein-Uhlenbeck models
        to phylogenetic comparative data using Bayesian reversible-jump
        methods. See Uyeda and Harmon (2014)
        <DOI:10.1093/sysbio/syu057>.
License: GPL (>= 2)
Depends: ape (>= 3.0-6), coda, geiger(>= 2.0), phytools, R (>= 2.15.0)
Imports: assertthat, denstrip, fitdistrplus, foreach, graphics,
        grDevices, MASS, Matrix, mnormt, Rcpp (>= 0.10.3), stats
Suggests: doParallel, testthat
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: libglpk-dev make libxml2-dev
Repository: https://phylotastic.r-universe.dev
Date/Publication: 2026-02-11 18:08:46 UTC
RemoteUrl: https://github.com/uyedaj/bayou
RemoteRef: HEAD
RemoteSha: e8bf7f7f0c85cca83d8be4cd584cf3dd3318157d
NeedsCompilation: yes
Packaged: 2026-06-12 22:01:39 UTC; root
Author: Josef C. Uyeda [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4624-9680>),
  Jon Eastman [ctb],
  Luke Harmon [ctb] (ORCID: <https://orcid.org/0000-0002-4985-5750>),
  Abhishek Hari [ctb]