{ "_id": "6abd050399f7aa8c6aa4ec96", "Package": "sisters", "Title": "Runs various sister group comparisons to test hypotheses about\ndiversification", "Version": "0.0.0.9000", "Authors@R": "person(given = \"Brian\",\nfamily = \"O'Meara\",\nrole = c(\"aut\", \"cre\"),\nemail = \"omeara.brian@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0337-5997\"))", "Description": "Sister groups are pairs of clades that differ in a key\ncharacter. If that character leads to higher diversification\nrate, then clades with that trait should have more species than\ntheir sisters. There are several tests to see if this is the\ncase, ranging from a basic sign test to more complex ones (many\nimplemented in the ape package). This package can identify\nsister groups that differ in a binary trait and perform all the\nrelevant tests. It can also discretize a continuous trait into\na binary \"high\" vs \"low\" state.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libglpk-dev make libxml2-dev", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2023-09-29 15:14:34 UTC", "RemoteUrl": "https://github.com/bomeara/sisters", "RemoteRef": "HEAD", "RemoteSha": "219ba29741758d5a089a2f9aa6a7852d56b68250", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-30 12:41:45 UTC", "User": "root" }, "Author": "Brian O'Meara [aut, cre] (ORCID:\n)", "Maintainer": "Brian O'Meara ", "_user": "phylotastic", "_type": "src", "_file": "sisters_0.0.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/da847f9cc4518d103f295afd7924224ef79b213515cdf3560699a34683478944", "_filesize": 127855, "_sha256": "da847f9cc4518d103f295afd7924224ef79b213515cdf3560699a34683478944", "_expires": "2027-01-08T12:48:01.000Z", "_created": "2026-09-30T12:41:45.000Z", "_published": "2026-09-30T12:48:02.809Z", "_jobs": [ { "job": 109890483048, "time": 173, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11096626737" }, { "job": 109890483422, "time": 196, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11095858175" }, { "job": 109890482886, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11096148149" }, { "job": 109890483020, "time": 110, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11096947104" }, { "job": 109888622709, "time": 302, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11096581282" }, { "job": 109890482853, "time": 129, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11096836593" }, { "job": 109890482934, "time": 115, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11096567198" }, { "job": 109890483012, "time": 65, "config": "windows-oldrel-x86_64", "r": 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"pbapply", "role": "Imports" }, { "package": "phangorn", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "pkgdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" } ], "_owner": "bomeara", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "bomeara", "count": 15, "uuid": 1612612 } ], "_userbio": { "uuid": 1652822, "type": "organization", "name": "phylotastic", "followers": 5 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sisters" }, "_devurl": "https://github.com/bomeara/sisters", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/sisters.html" ], "_cranurl": false, "_exports": [ "sis_clean", "sis_discretize", "sis_format_comparison", "sis_format_simpified", "sis_get_sister_pair", "sis_get_sisters", "sis_iterate", "sis_test" ], "_help": [ { "page": "sis_clean", "title": "Clean up trait and tree", "topics": [ "sis_clean" ] }, { "page": "sis_discretize", "title": "Discretize continuous trait data", "topics": [ "sis_discretize" ] }, { "page": "sis_find_taxon", "title": "Is the taxon in one of the sister groups", "topics": [ "sis_find_taxon" ] }, { "page": "sis_format_comparison", "title": "Get comparison format", "topics": [ "sis_format_comparison" ] }, { "page": "sis_format_simpified", "title": "Get simplified comparison format suitable for passing into other functions", "topics": [ "sis_format_simpified" ] }, { "page": "sis_get_monomorphic", "title": "Get monomorphic trait", "topics": [ "sis_get_monomorphic" ] }, { "page": "sis_get_sister_pair", "title": "Get sister groups for a node", "topics": [ "sis_get_sister_pair" ] }, { "page": "sis_get_sisters", "title": "Get sister groups for all internal nodes", "topics": [ "sis_get_sisters" ] }, { "page": "sis_get_trait_values", "title": "Get trait values for tip numbers", "topics": [ "sis_get_trait_values" ] }, { "page": "sis_iterate", "title": "Iterate tests trying a variety of cutoff values", "topics": [ "sis_iterate" ] }, { "page": "sis_iterate_single_run", "title": "Do a test with a single cutoff value", "topics": [ "sis_iterate_single_run" ] }, { "page": "sis_test", "title": "Compute multiple tests based on sister group comparisons", "topics": [ "sis_test" ] }, { "page": "tryNA", "title": "Try but returns NA rather than error", "topics": [ "tryNA" ] } ], "_readme": "https://github.com/bomeara/sisters/raw/HEAD/README.md", "_rundeps": [ "ape", "backports", "checkmate", "cli", "clusterGeneration", "coda", "codetools", "colorspace", "combinat", "cpp11", "DEoptim", "deSolve", "digest", "doParallel", "expm", "foreach", "future", "future.apply", "geiger", "generics", "globals", "glue", "igraph", "iterators", 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