{ "_id": "6a1f2a57b401979e7342470b", "Package": "sisters", "Title": "Runs various sister group comparisons to test hypotheses about\ndiversification", "Version": "0.0.0.9000", "Authors@R": "person(given = \"Brian\",\nfamily = \"O'Meara\",\nrole = c(\"aut\", \"cre\"),\nemail = \"omeara.brian@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0337-5997\"))", "Description": "Sister groups are pairs of clades that differ in a key\ncharacter. If that character leads to higher diversification\nrate, then clades with that trait should have more species than\ntheir sisters. There are several tests to see if this is the\ncase, ranging from a basic sign test to more complex ones (many\nimplemented in the ape package). This package can identify\nsister groups that differ in a binary trait and perform all the\nrelevant tests. It can also discretize a continuous trait into\na binary \"high\" vs \"low\" state.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libglpk-dev make libxml2-dev", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2023-09-29 15:14:34 UTC", "RemoteUrl": "https://github.com/bomeara/sisters", "RemoteRef": "HEAD", "RemoteSha": "219ba29741758d5a089a2f9aa6a7852d56b68250", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 19:03:03 UTC", "User": "root" }, "Author": "Brian O'Meara [aut, cre] (ORCID:\n)", "Maintainer": "Brian O'Meara ", "MD5sum": "18202a025ee64e19610c6d8207883c90", "_user": "phylotastic", "_type": "src", "_file": "sisters_0.0.0.9000.tar.gz", "_fileid": "c7a1749bd056e6114adc3c4c10adf4371c35e677f0824c617262c11e88a39802", "_filesize": 126040, "_sha256": "c7a1749bd056e6114adc3c4c10adf4371c35e677f0824c617262c11e88a39802", "_created": "2026-06-02T19:03:03.000Z", "_published": "2026-06-02T19:09:11.223Z", "_distro": "noble", "_jobs": [ { "job": 79150316608, "time": 170, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7367283528" }, { "job": 79150316585, "time": 167, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7367282857" }, { "job": 79150316586, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7367341354" }, { "job": 79150316546, "time": 105, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7367325689" }, { "job": 79149633492, "time": 212, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7367220400" }, { "job": 79150316516, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367268119" }, { "job": 79150316631, "time": 89, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7367254526" }, { "job": 79150316540, "time": 95, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7367256369" }, { "job": 79150316552, "time": 115, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7367263784" } ], "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/26841508041", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bomeara/sisters", "_commit": { "id": "219ba29741758d5a089a2f9aa6a7852d56b68250", "author": "Brian O'Meara ", "committer": "Brian O'Meara ", "message": "made webpage\n", "time": 1696000474 }, "_maintainer": { "name": "Brian OMeara", "email": "omeara.brian@gmail.com", "login": "bomeara", "mastodon": "@omearabrian@mastodon.social", "bluesky": "@omearabrian.bsky.social", "orcid": "0000-0002-0337-5997", "description": "", "uuid": 1612612 }, "_registered": true, "_dependencies": [ { "package": "ape", "role": "Imports" }, { "package": "geiger", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "pbapply", "role": "Imports" }, { "package": "phangorn", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "pkgdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" } ], "_owner": "bomeara", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "bomeara", "count": 15, "uuid": 1612612 } ], "_userbio": { "uuid": 1652822, "type": "organization", "name": "phylotastic" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sisters" }, "_devurl": "https://github.com/bomeara/sisters", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/sisters.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "sis_clean", "sis_discretize", "sis_format_comparison", "sis_format_simpified", "sis_get_sister_pair", "sis_get_sisters", "sis_iterate", "sis_test" ], "_help": [ { "page": "sis_clean", "title": "Clean up trait and tree", "topics": [ "sis_clean" ] }, { "page": "sis_discretize", "title": "Discretize continuous trait data", "topics": [ "sis_discretize" ] }, { "page": "sis_find_taxon", "title": "Is the taxon in one of the sister groups", "topics": [ "sis_find_taxon" ] }, { "page": "sis_format_comparison", "title": "Get comparison format", "topics": [ "sis_format_comparison" ] }, { "page": "sis_format_simpified", "title": "Get simplified comparison format suitable for passing into other functions", "topics": [ "sis_format_simpified" ] }, { "page": "sis_get_monomorphic", "title": "Get monomorphic trait", "topics": [ "sis_get_monomorphic" ] }, { "page": "sis_get_sister_pair", "title": "Get sister groups for a node", "topics": [ "sis_get_sister_pair" ] }, { "page": "sis_get_sisters", "title": "Get sister groups for all internal nodes", "topics": [ "sis_get_sisters" ] }, { "page": "sis_get_trait_values", "title": "Get trait values for tip numbers", "topics": [ "sis_get_trait_values" ] }, { "page": "sis_iterate", "title": "Iterate tests trying a variety of cutoff values", "topics": [ "sis_iterate" ] }, { "page": "sis_iterate_single_run", "title": "Do a test with a single cutoff value", "topics": [ "sis_iterate_single_run" ] }, { "page": "sis_test", "title": "Compute multiple tests based on sister group comparisons", "topics": [ "sis_test" ] }, { "page": "tryNA", "title": "Try but returns NA rather than error", "topics": [ "tryNA" ] } ], "_readme": "https://github.com/bomeara/sisters/raw/HEAD/README.md", "_rundeps": [ "ape", "backports", "checkmate", "cli", "clusterGeneration", "coda", "codetools", "colorspace", "combinat", "cpp11", "DEoptim", "deSolve", "digest", "doParallel", "expm", "foreach", "future", "future.apply", "geiger", "generics", "globals", "glue", "igraph", "iterators", "lattice", "lifecycle", "listenv", "magrittr", "maps", "MASS", "Matrix", "mnormt", "mvtnorm", "ncbit", "nlme", "numDeriv", "optimParallel", "osqp", "parallelly", "pbapply", "phangorn", "phytools", "pkgconfig", "progressr", "Rcpp", "RcppArmadillo", "rlang", "S7", "scatterplot3d", "subplex", "vctrs" ], "_score": 2, "_indexed": false, "_nocasepkg": "sisters", "_universes": [ "phylotastic" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.0.9000", "date": "2026-06-02T19:05:56.000Z", "distro": "noble", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "fd7febc57cbbe78b008826c1acbde1215e9862c9714de227eff0defdf3c316dd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/26841508041" }, { "r": "4.6.0", "os": "linux", "version": "0.0.0.9000", "date": "2026-06-02T19:05:53.000Z", "distro": "noble", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "0e52efe421b22b29c8b4b34e6df05d95a84cc9a2adedddedce4368cf02b919e8", "status": "success", "check": "NOTE", "buildurl": 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