{ "_id": "6ae48d67327abcdf86868805", "Package": "sisters", "Title": "Runs various sister group comparisons to test hypotheses about\ndiversification", "Version": "0.0.0.9000", "Authors@R": "person(given = \"Brian\",\nfamily = \"O'Meara\",\nrole = c(\"aut\", \"cre\"),\nemail = \"omeara.brian@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0337-5997\"))", "Description": "Sister groups are pairs of clades that differ in a key\ncharacter. If that character leads to higher diversification\nrate, then clades with that trait should have more species than\ntheir sisters. There are several tests to see if this is the\ncase, ranging from a basic sign test to more complex ones (many\nimplemented in the ape package). This package can identify\nsister groups that differ in a binary trait and perform all the\nrelevant tests. It can also discretize a continuous trait into\na binary \"high\" vs \"low\" state.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libglpk-dev make libxml2-dev", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2023-09-29 15:14:34 UTC", "RemoteUrl": "https://github.com/bomeara/sisters", "RemoteRef": "HEAD", "RemoteSha": "219ba29741758d5a089a2f9aa6a7852d56b68250", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-30 12:25:01 UTC", "User": "root" }, "Author": "Brian O'Meara [aut, cre] (ORCID:\n)", "Maintainer": "Brian O'Meara ", "_user": "phylotastic", "_type": "src", "_file": "sisters_0.0.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/2239d7c72660f9d48219dbe403fe0d86cdaf191fc777aa9bd86acee5e2743f80", "_filesize": 126987, "_sha256": "2239d7c72660f9d48219dbe403fe0d86cdaf191fc777aa9bd86acee5e2743f80", "_expires": "2027-02-07T12:28:21.000Z", "_created": "2026-10-30T12:25:01.000Z", "_published": "2026-10-30T12:28:22.917Z", "_upstream": "https://github.com/bomeara/sisters", "_status": "success", "_maintainer": { "name": "Brian OMeara", "email": "omeara.brian@gmail.com", "login": "bomeara", "mastodon": "@omearabrian@mastodon.social", "bluesky": "@omearabrian.bsky.social", "orcid": "0000-0002-0337-5997", "description": "", "uuid": 1612612 }, "_jobs": [ { "job": 124060889549, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12975819354" }, { "job": 124060889668, "time": 165, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12975698801" }, { "job": 124060889635, "time": 96, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12976716709" }, { "job": 124060889694, "time": 114, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12976008810" }, { "job": 124059306802, "time": 223, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12975199951" }, { "job": 124060889680, "time": 120, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12976965332" }, { "job": 124060889762, "time": 80, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12975683551" }, { "job": 124060889717, "time": 76, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12976995333" }, { "job": 124060889726, "time": 66, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12976661382" } ], "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001", "_commit": { "id": "219ba29741758d5a089a2f9aa6a7852d56b68250", "author": "Brian O'Meara ", "committer": "Brian O'Meara ", "message": "made webpage\n", "time": 1696000474 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "ape", "role": "Imports" }, { "package": "geiger", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "pbapply", "role": "Imports" }, { "package": "phangorn", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "pkgdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" } ], "_owner": "bomeara", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "bomeara", "count": 15, "uuid": 1612612 } ], "_userbio": { "uuid": 1652822, "type": "organization", "name": "phylotastic", "followers": 5 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sisters" }, "_devurl": "https://github.com/bomeara/sisters", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/sisters.html" ], "_cranurl": false, "_exports": [ "sis_clean", "sis_discretize", "sis_format_comparison", "sis_format_simpified", "sis_get_sister_pair", "sis_get_sisters", "sis_iterate", "sis_test" ], "_help": [ { "page": "sis_clean", "title": "Clean up trait and tree", "topics": [ "sis_clean" ] }, { "page": "sis_discretize", "title": "Discretize continuous trait data", "topics": [ "sis_discretize" ] }, { "page": "sis_find_taxon", "title": "Is the taxon in one of the sister groups", "topics": [ "sis_find_taxon" ] }, { "page": "sis_format_comparison", "title": "Get comparison format", "topics": [ "sis_format_comparison" ] }, { "page": "sis_format_simpified", "title": "Get simplified comparison format suitable for passing into other functions", "topics": [ "sis_format_simpified" ] }, { "page": "sis_get_monomorphic", "title": "Get monomorphic trait", "topics": [ "sis_get_monomorphic" ] }, { "page": "sis_get_sister_pair", "title": "Get sister groups for a node", "topics": [ "sis_get_sister_pair" ] }, { "page": "sis_get_sisters", "title": "Get sister groups for all internal nodes", "topics": [ "sis_get_sisters" ] }, { "page": "sis_get_trait_values", "title": "Get trait values for tip numbers", "topics": [ "sis_get_trait_values" ] }, { "page": "sis_iterate", "title": "Iterate tests trying a variety of cutoff values", "topics": [ "sis_iterate" ] }, { "page": "sis_iterate_single_run", "title": "Do a test with a single cutoff value", "topics": [ "sis_iterate_single_run" ] }, { "page": "sis_test", "title": "Compute multiple tests based on sister group comparisons", "topics": [ "sis_test" ] }, { "page": "tryNA", "title": "Try but returns NA rather than error", "topics": [ "tryNA" ] } ], "_readme": "https://github.com/bomeara/sisters/raw/HEAD/README.md", "_rundeps": [ "ape", "backports", "checkmate", "cli", "clusterGeneration", "coda", "codetools", "colorspace", "combinat", "cpp11", "DEoptim", "deSolve", "digest", "doParallel", "expm", "foreach", "future", "future.apply", "geiger", "generics", "globals", "glue", "igraph", "iterators", "lattice", "lifecycle", "listenv", "magrittr", "maps", "MASS", "Matrix", "mnormt", "mvtnorm", "ncbit", "nlme", "numDeriv", "optimParallel", "osqp", "parallelly", "pbapply", "phangorn", "phytools", "pkgconfig", "progressr", "Rcpp", "RcppArmadillo", "rlang", "S7", "scatterplot3d", "subplex", "vctrs" ], "_score": 2, "_indexed": false, "_nocasepkg": "sisters", "_universes": [ "phylotastic" ], "_indexurl": "https://bomeara.r-universe.dev/sisters", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.0.9000", "date": "2026-10-30T12:27:27.000Z", "distro": "resolute", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/760b27f99908b76c8a773f6babab274765c13cea4ee6649a033af4bdd73f5738", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.6.1", "os": "linux", "version": "0.0.0.9000", "date": "2026-10-30T12:27:49.000Z", "distro": "resolute", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/8a6fc7ca99e712d6cbe7be5c9009c081aa5473767399e2dce551edc275c64dce", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.5.3", "os": "mac", "version": "0.0.0.9000", "date": "2026-10-30T12:26:42.000Z", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/407286d695fa5411d3578fc174e30f72978ba03c2d74e2875a285543e7517299", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.6.1", "os": "mac", "version": "0.0.0.9000", "date": "2026-10-30T12:26:55.000Z", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/ffa31d219d485972593031885bb366514415314068ba64e5afca8e4fbb718af3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.0.9000", "date": "2026-10-30T12:27:18.000Z", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/ae20dd68c95b775b9126c91a780e597b48d8c1cee01b5c25237a1f07b466c151", "status": "success", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.7.0", "os": "win", "version": "0.0.0.9000", "date": "2026-10-30T12:26:19.000Z", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/8efbd10c37bde65812ef4517b8b97fa44d5d8d2e0d658ea4876288bd31da69b1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.5.3", "os": "win", "version": "0.0.0.9000", "date": "2026-10-30T12:26:15.000Z", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/ec604b4bab595430d8e60ad7bd6f2cbc63ac26265a8e45deed8693f8e533ca58", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" }, { "r": "4.6.1", "os": "win", "version": "0.0.0.9000", "date": "2026-10-30T12:26:09.000Z", "commit": "219ba29741758d5a089a2f9aa6a7852d56b68250", "fileid": "https://r2.ropensci.org/0a72059f74190f6b2184e411507d70f1d2bb142db5599493f587452f85d897c3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/41054705001" } ] }