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  "Title": "Exploring the Phylogenetic Signal in Continuous Traits",
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  "Author": "Francois Keck <francois.keck@gmail.com>",
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  "Description": "A collection of tools to explore the phylogenetic signal\nin univariate and multivariate data. The package provides\nfunctions to plot traits data against a phylogenetic tree,\ndifferent measures and tests for the phylogenetic signal,\nmethods to describe where the signal is located and a\nphylogenetic clustering method.",
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    "plot.phylocorrelogram",
    "plot.phylosim",
    "plot.phylosimsignal",
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    "print.phylosimsignal",
    "read.p4d",
    "rTraitContWeight",
    "subsetPhyloSimSignal",
    "white2red"
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      "title": "Phylogeny and pollution sensitivity of diatoms",
      "object": "navic",
      "class": [
        "phylo4d"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
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      "page": "layouterize",
      "title": "Set layout for plots",
      "topics": [
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      ]
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    {
      "page": "layouterizeRatio",
      "title": "Set layout for plots",
      "topics": [
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      ]
    },
    {
      "page": "orderGrArg",
      "title": "Reordering vector or matrix of settings.",
      "topics": [
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    },
    {
      "page": "barplot.phylo4d",
      "title": "Barplot of Traits Values along a Phylogeny",
      "topics": [
        "barplot.phylo4d"
      ]
    },
    {
      "page": "descentsNames",
      "title": "Names of descents",
      "topics": [
        "descentsNames"
      ]
    },
    {
      "page": "directDescents",
      "title": "ID of direct descents",
      "topics": [
        "directDescents"
      ]
    },
    {
      "page": "distEq",
      "title": "Pairwise Distance from Regularly Distributed Points",
      "topics": [
        "distEq"
      ]
    },
    {
      "page": "dotplot",
      "title": "Dotplot",
      "topics": [
        "dotplot"
      ]
    },
    {
      "page": "dotplot.phylo4d",
      "title": "Dotplot of Traits Values along a Phylogeny",
      "topics": [
        "dotplot.phylo4d"
      ]
    },
    {
      "page": "evenColors",
      "title": "Palette of evenly distributed colors",
      "topics": [
        "evenColors"
      ]
    },
    {
      "page": "focus",
      "title": "Focus on sub parts of a plot",
      "topics": [
        "focusStop",
        "focusTips",
        "focusTraits",
        "focusTree"
      ]
    },
    {
      "page": "graphClust",
      "title": "Phylogenetically constrained clustering",
      "topics": [
        "graphClust"
      ]
    },
    {
      "page": "gridplot",
      "title": "Gridplot",
      "topics": [
        "gridplot"
      ]
    },
    {
      "page": "gridplot.phylo4d",
      "title": "Gridplot of Traits Values along a Phylogeny",
      "topics": [
        "gridplot.phylo4d"
      ]
    },
    {
      "page": "kStarTest",
      "title": "Computes permutation test for Blomberg's K Star",
      "topics": [
        "kStarTest"
      ]
    },
    {
      "page": "kTest",
      "title": "Computes permutation test for Blomberg's K",
      "topics": [
        "kTest"
      ]
    },
    {
      "page": "lambdaTest",
      "title": "Test Pagel's Lambda Optimize Pagel's Lambda and do a likelihood ratio test.",
      "topics": [
        "lambdaTest"
      ]
    },
    {
      "page": "lipaMoran",
      "title": "Local Indicator of Phylogenetic Association",
      "topics": [
        "lipaMoran"
      ]
    },
    {
      "page": "mantelStat",
      "title": "Mantel statistic",
      "topics": [
        "mantelStat"
      ]
    },
    {
      "page": "matchTipsAndTraits",
      "title": "Match matrix row/col names with phylo4d tips/traits",
      "topics": [
        "matchTipsAndTraits"
      ]
    },
    {
      "page": "moranTest",
      "title": "Computes permutation test for Moran's I",
      "topics": [
        "moranTest"
      ]
    },
    {
      "page": "multiplot.phylo4d",
      "title": "Plots of Traits Values along a Phylogeny",
      "topics": [
        "multiplot.phylo4d"
      ]
    },
    {
      "page": "navic",
      "title": "Phylogeny and pollution sensitivity of diatoms",
      "topics": [
        "navic"
      ]
    },
    {
      "page": "pagelLogLik",
      "title": "Computes log-likelihood for data and a given value of Pagel's Lambda",
      "topics": [
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    },
    {
      "page": "phyloCorrelogram",
      "title": "Phylogenetic correlogram",
      "topics": [
        "phyloCorrelogram"
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    {
      "page": "phylosignal",
      "title": "phylosignal",
      "topics": [
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    {
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      "title": "Computes phylogenetic signal with different methods",
      "topics": [
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    {
      "page": "phyloSignalBS",
      "title": "Computes phylogenetic signal for bootstrapped replicates of a phylogeny.",
      "topics": [
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      ]
    },
    {
      "page": "phyloSignalINT",
      "title": "Computes phylogenetic signal at each internal node of a phylogeny",
      "topics": [
        "phyloSignalINT"
      ]
    },
    {
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      "title": "Simulate the behaviour of phylogenetic signal statistics with a given phylogeny",
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      "title": "Phylogenetic signal estimation as a fraction of a Brownian Motion process.",
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    {
      "page": "phyloWeights",
      "title": "Phylogenetic weights matrix",
      "topics": [
        "phyloWeights"
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    },
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      "title": "Plot phylogenetically constrained clustering",
      "topics": [
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    },
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      "page": "plot.phylocorrelogram",
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    },
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      "page": "print.phylosimsignal",
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      "title": "phyloSimSignal subsetting",
      "topics": [
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    {
      "page": "white2red",
      "title": "Color Palette",
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