{ "_id": "6a102883acfb0bcc41c90b7c", "Package": "phyclust", "Version": "0.1-34", "Date": "2023-09-03", "Title": "Phylogenetic Clustering (Phyloclustering)", "Authors@R": "c(person(\"Wei-Chen\", \"Chen\", role = c(\"aut\", \"cre\"), email =\n\"wccsnow@gmail.com\"), person(\"Karin\", \"Dorman\", role =\n\"aut\"), person(\"Yan-Han\", \"Chen\", role = \"ctb\"))", "LazyLoad": "yes", "LazyData": "yes", "Copyright": "See phyclust/inst/Documents/ for files in src/msdir/,\nsrc/seq-gen/, src/paml_baseml, and R/ttzeng-*.r.", "Description": "Phylogenetic clustering (phyloclustering) is an\nevolutionary Continuous Time Markov Chain model-based approach\nto identify population structure from molecular data without\nassuming linkage equilibrium. The package phyclust (Chen 2011)\nprovides a convenient implementation of phyloclustering for DNA\nand SNP data, capable of clustering individuals into\nsubpopulations and identifying molecular sequences\nrepresentative of those subpopulations. It is designed in C for\nperformance, interfaced with R for visualization, and\nincorporates other popular open source programs including ms\n(Hudson 2002) , seq-gen\n(Rambaut and Grassly 1997)\n, Hap-Clustering (Tzeng\n2005) and PAML baseml (Yang 1997,\n2007) ,\n, for simulating data, additional\nanalyses, and searching the best tree. See the phyclust website\nfor more information, documentations and examples.", "BugReports": "https://github.com/snoweye/phyclust/issues", "License": "GPL (>= 2)", "URL": "https://snoweye.github.io/phyclust/", "NeedsCompilation": "yes", "Maintainer": "Wei-Chen Chen ", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2023-09-06 02:49:02 UTC", "RemoteUrl": "https://github.com/snoweye/phyclust", "RemoteRef": "HEAD", "RemoteSha": "3f82c7bc4f328ba3b07f50cd82eb09997f00fc17", "Packaged": { "Date": "2026-05-13 07:56:22 UTC", "User": "root" }, "Author": "Wei-Chen Chen [aut, cre],\nKarin Dorman [aut],\nYan-Han Chen [ctb]", "MD5sum": "e8289885a682236c5c7e00c114421f8a", "_user": "phylotastic", "_type": "src", "_file": "phyclust_0.1-34.tar.gz", "_fileid": "77499db44066a01cd7137003586742fb06caafad5aa00a08c3d2891f6ec1e767", "_filesize": 1198678, "_sha256": "77499db44066a01cd7137003586742fb06caafad5aa00a08c3d2891f6ec1e767", "_created": "2026-05-13T07:56:22.000Z", "_published": 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"message": "minor\n", "time": 1693968542 }, "_maintainer": { "name": "Wei-Chen Chen", "email": "wccsnow@gmail.com", "login": "snoweye", "uuid": 2565440 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "ape", "role": "Depends" } ], "_owner": "snoweye", "_selfowned": false, "_usedby": 8, "_updates": [], "_tags": [], "_stars": 10, "_contributors": [ { "user": "snoweye", "count": 70, "uuid": 2565440 }, { "user": "yanhanchen", "count": 1, "uuid": 42162906 } ], "_userbio": { "uuid": 1652822, "type": "organization", "name": "phylotastic" }, "_downloads": { "count": 2158, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phyclust" }, "_mentions": 12, "_devurl": "https://github.com/snoweye/phyclust", "_searchresults": 199, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/phyclust.html", "extra/readme.html", 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